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LinneanSoceity.gif (6900 bytes)   The Linnean Society of London

Plant species-level systematics: patterns, processes and new applications
A 3-day international symposium from 13 to 15 November 2002 in Leiden, The Netherlands


Abstracts


A secondary hybrid zone between diploid Dactylorhiza incarnata ssp. cruenta and allotetraploid D. lapponica (Orchidaceae); allozyme and morphological characterization

Sunniva Aagaard

Norwegian University of Science and Technology, Faculty of Natural Sciences and Technology, Department of Biology, Museum, N-7491 Trondheim, Norway

Poster — Secondary hybrid zones are not uncommon in Dactylorhiza, but rigorous studies have rarely been undertaken. The main aim of this study is to describe the hybrid D. incarnata ssp. cruenta x D. lapponica (2n=3x=60) and its parent taxa with morphological and isozyme markers and to assess interploidal gene flow. The analysed material of 270 individuals was collected from one allopatric D. incarnata ssp. cruenta (2n=2x=40) population, one allopatric D. lapponica population (2n=2x=80) and two populations were the species were found in parapatry. Photometric quantification of DNA was performed on 59 individuals, of which 16 were found to be diploid, 12 triploid and 31 tetraploid. D. lapponica is a segmental allotetraploid resulting from pairing between homoeologous chromosomes, whereas D. incarnata ssp. cruenta is monomorphic at the four loci investigated. The unbalanced banding patterns observed in tetraploids means that triploids could not be identified solely on the basis of isozyme banding interpretation. Incidents of introgression and homoeologous pairing were found to be indistinguishable, since no variation was observed in the diploid parent species. Discriminant analyses of morphological data showed that the parent species were not more similar in the parapatric populations compared to when they occur in allopatry. This either indicates that introgression has not occurred, or that the populations are not isolated enough to prevent gene flow.


Molecular diagnostics at and below the species level

Konrad Bachmann

Department of Taxonomy, Institut für Pflanzengenetik und Kulturpflanzenforschung, IPK Gatersleben, D-06466 Gatersleben, Germany

Invited talk — The identification of plant genetic resources at and below the species level is increasingly becoming a matter of public interest. Questions of the physical or intellectual ownership and the geographical origin of plant species, varieties or cultivars can have considerable consequences and may lead to legal disputes which require an accurate identification based on objective criteria. The material in question may not be a complete plant, but a part such as a fruit, seed, or dried leaf material. Many of these plants will be the products of plant breeding involving recombination, induced mutations, or genetic transformation. The traditional approach to identification which requires individual training and familiarity with the characters of use in each separate group of plants will not be able to keep pace with these increasing demands. While this approach will remain indispensable for the characterization of biological diversity, a new approach will be needed for identification providing access to all of the relevant information about a plant. Since all heritable characters are eventually encoded in the genome, and character differences will be reflected by sequence polymorphisms, methods based on the identification and interpretation of sequence polymorphisms may provide a general and reliable way to identify plants. Moreover, these methods will be universal and standardized, and they can be applied by technical personnel with a general training in basic methods. The success of this approach will depend on the selection and interpretation of relevant sequence polymorphisms. Random markers from throughout the genome (RAPD, AFLP) have provided quick and easy access to subspecific genetic structuring , but for technical and theoretical reasons it is not possible to convert these analytical data directly into diagnostic applications. This is different for individually characterized microsatellite loci, but eventually single nucleotide polymorphisms (SNP) appear to be the ultimate marker system for the development of diagnostic methods. Efforts are underway to find SNP patterns corresponding to recognized taxa and to link SNP patterns with relevant information on phylogeny, morphology and physiology. The enormous amount of research required to reach the necessary level of informativeness and reliability for all plants is justified for four reasons: (1) the method is likely to provide the definitive access to biodiversty information, (2) the data will be universal and cumulative, (3) much relevant information will be obtained as a by-product of other molecular research, and (3) the data will be compatible with any formal representation of taxonomic relationships. Practical aspects to be discussed will be methods of SNP detection and problems in the correlation of SNP patterns with biologically relevant data.


Characterization of angiosperm nrDNA polymorphism: paralogy and pseudogenes

C. Donovan Bailey1, Colin E. Hughes1, Stephen A. Harris1 & Timothy G. Carr2

1Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK
2Department of Ecology and Evolutionary Biology, Corson Hall, Cornell University, Ithaca, NY 14853, USA

Talk — Nuclear ribosomal DNA (nrDNA) internal transcribed spacer region sequences (ITS 1, 5.8S, and ITS 2) have been a staple source of data for the study of lower level phylogenetic relationships among plant taxa for more than ten years. Many early reports of ITS variation were consistent with homogeneous nrDNA arrays within individuals. However, some older and more recent studies have identified the occurrence of intra-individual nrDNA polymorphism across a range of taxa including presumed non-hybrid diploids, suggesting that complete concerted evolution should not be assumed when embarking on phylogenetic studies using nrDNA sequences. Furthermore, it is clear that polymorphic individuals often contain potentially non-functional nrDNA copies (pseudogenes) in addition to functional copies. Putatively functional and non-functional sequences have generally been referred to as paralogs and a variety of techniques have been used to distinguish these two classes. Here we review species-tree reconstruction when faced with nrDNA polymorphism. In doing so, we attempt to clarify nrDNA paralogy in relation to the functional/nonfunctional classes of sequences. We examine the various definitions and characterizations of nrDNA pseudogenes as well as the relative merits and limitations of a subset of pseudogene detection methods. Finally, we present and discuss the advantages of a tree-based approach to distinguish pseudogenes based on comparisons of sequence substitution patterns from putatively conserved (e.g., 5.8S) and less constrained (e.g., ITS 1 and ITS 2) regions.


Radiation in Cape Pelargonium

Freek T. Bakker1, Elizabeth M. Marais2, Tasoula Touloumenidou3, Priyani Hettiarachi4, Alastair Culham5 & Mary Gibby6

1Nationaal Herbarium Nederland, Wageningen University branch, Generaal Foulkesweg 37, 6703 BL Wageningen, The Netherlands
2Department of Botany, Stellenbosch University, Private Bag X1, Matieland, RSA
3Institut für Botanik, Schlossgarten 3, 48149 Münster, Germany
4Department of Botany, University of Sri Jayawardanapura, Nugegoda, Sri Lanka
5Department of Botany, Centre for Plant Diversity and Systematics, The University of Reading, P.O. Box 221, Reading RG6 6AS, UK
6Royal Botanic Garden Edinburgh, 20a Inverleith Row, Edinburgh, EH3 5LR, UK

Invited talk — Phylogenetic hypotheses for the largely South African genus Pelargonium L'Hér. (Geraniaceae) were derived based on DNA sequence data from nuclear, chloroplast and mitochondrial encoded regions. A single hypothesis synthesising the information in the three data sets was constructed for 149 species. Pelargonium, a characteristic element of the Cape Floristic Region, was found to consist of five main clades, structured in two (subgeneric) clades that correlate with chromosome size. Contrasting evolutionary strategies and speciation modes among these clades can be inferred based on patterns of population size, biogeographic distributions and dispersal capacity, pollination biology and karyological diversification.
A wide range of variation in morphology and life form occurs in one big clade, comprising almost 60% of the total number of species known in the genus. This so-called Cape ‘winter rainfall’ clade harbours mostly xerophytic forms including geophytes, stem and leaf succulents and has been considered the result of in situ proliferation, possibly in response to late-Miocene and Pliocene aridification events. Nested within the winter rainfall clade is a clade comprising ± 80 species from the geophytic Pelargonium section Hoarea and characterised by the possession of (a series of) tunicate tubers. These species have long been considered a typical example of a ‘recent Cape radiation’ in which speciation was probably driven by environmental rather than historical factors. However, results obtained from AFLP studies and from (preliminary) cpDNA clockdating analyses suggest that the origin of this geophytic clade may date back much further, questioning the ‘recent aridification response’ hypothesis.
Other, smaller, winterrainfall clades exist within Pelargonium. The fact that they did not proliferate as much as did the main winter rainfall clade may be attributed to absence of ‘key innovations’ related to stem succulence and tuber formation.


Detecting and visualizing reticulate patterns in molecular data

Hans-Jürgen Bandelt

Fachbereich Mathematik, Universität Hamburg, 20146 Hamburg, Germany

Invited talk - Tree-building techniques often give only little insight into the structure of a set of (homologous or paralogous) DNA sequences, especially when the data are far from constituting a perfect phylogeny. A whole array of statistical tests are available that aim at signalising reticulate patterns that would e.g. emerge through recombination (Posada 2002). It is however not safe to rely on a single family of tests and to reach far-flung conclusions without a detailed exploration of the data that seeks to detect anomalies and reconstruct their potential causes. There is certainly a lesson to learn from human mitochondrial DNA: a Science paper (that turned out to be the canard of the year) claimed that there was evidence that human mtDNA would recombine (Awadalla et al. 1999). This analysis, was based on a patently unsuitable linkage disequilibrium measure and an inappropriate test scenario employing only a tiny portion of the published data. This notwithstanding, several papers in the field actually presented data with a few instances of “recombination”, which however were never noticed by the authors. Such data sets are notoriously flawed for several reasons: e.g. sample contamination, PCR artefacts (phantom mutations), artificial recombination of non-contiguous stretches of DNA, and poor reading and documentation of sequencing outputs (Bandelt et al. 2000, 2001, 2002). In most cases a thorough explorative analysis contrasting the particular data with the total database would have pinpointed to the reticulate patterns and the increased level of homoplasy. Analysis of incompatibilities of the full data matrix (or of certain submatrices) is one of the basic tools: e.g. Jakobsen & Easteal (1996) assessed incompatibilities of sites and confront the resulting pattern with the linear order of sites in the molecule. As is well known, pairwise compatibility is insufficient to guarantee a perfect phylogeny when the characters are not binary. The concept of strong compatibility introduced by Dress et al. (1997) circumvents this problem (at the expense that perfect phylogenies may harbour characters that are not strongly compatible). Moreover, a number of features of the full quasi-median network representing a particular data submatrix can directly be read off from pairwise strong compatibility of the participating characters.


Systematics of Grusonia Reichenbach ex Britton & Rose (Opuntioideae: Cactaceae)

Rolando T. Bárcenas & Julie A. Hawkins

Centre for Plant Diversity and Systematics, School of Plant Sciences, The University of Reading, Reading, RG6 6AS, UK

Poster — The genus Grusonia has undergone recent changes in its taxonomy to comprise approximately 19 species of opuntioids of the North American deserts of Mexico and the United States. Grusonia is a morphologically heterogeneous group of low to medium sized mat and clump-forming opuntioids. They are characterised by the clavate, ovate, or cylindric stems, the more or less flattened spines with bulbous bases, and the rudimentary papery-sheaths covering the tips of the spines.
Despite having distinctive morphologies the species of Grusonia show low levels of interspecific molecular variation. Four putatively fast-evolving molecular markers (ITS, rbcL-atpB, trnH-psbA, and trnL-F), have been used to assess phylogenetic relationships among these closely related species. These data have produced only partially resolved trees, and it is expected that morphological characters will enhance further resolution.


Internal Transcribed Spacer sequence diversity in two species of Asteraceae

Nigel P. Barker1, Seranne Howis1 & Inge von Senger1,2

1Molecular Systematics Facility, Department of Botany, Rhodes University, Grahamstown, 6140, South Africa
2Present address: School of Environmental Science, University College Northampton, Boughton Green Road, Northampton, NN2 7AL, UK

Talk — The Internal Transcribed Spacer (ITS) region of over 50 samples each of Chromolaena odorata and Chrysanthemoides monilifera have been obtained. Both these species are invasive weeds in various parts of the world. Chromolaena odorata is indigenous to Central and South America and the Greater Antilles, but is a major invasive in southern Africa and elsewhere in the world. Chrysanthemoides is indigenous to southern Africa, but is an invasive in Australia. These two species have very different dispersal systems, but little is known about the finer points of their reproductive biology.
Chrysanthemoides, a genus of two species, has a chequered taxonomic history, with numerous infraspecific taxa having been recognised in both species. Chromolaena is a much bigger genus, also not without taxonomic problems. The genetic diversity of Chromolaena odorata and Chrysanthemoides monilifera and its sister species are explored using ITS sequence data. Sequence diversities for these two species are compared, and the partitioning of this diversity is discussed in the context of infraspecific taxonomy, geography and physiology.


The causes of speciation in plant lineages

Timothy G. Barraclough1 & Gail Reeves2

1Department of Biological Sciences, Imperial College at Silwood Park, Ascot, Berkshire SL5 7PY, UK
2Compton Herbarium (Molecular Systematics Laboratory), Cape Town, Private Bag X7, Claremont, 7735 South Africa

Invited talk — Species-level phylogenetic trees reconstructed from molecular data can be used to test hypotheses about the timing and causes of diversification. We demonstrate this approach using a dated DNA sequence tree for South African Proteaceae. First, we use well-established methods to compare alternative models of the temporal dynamics of speciation and extinction. The results highlight the need for care in interpreting the apparent timing of speciation from dated trees. Second, we investigate the role of ecological and geographical factors in promoting speciation in the region. We discuss the strengths and weaknesses of species-level data for studies of speciation.


Modes, rates and mechanisms of local genomic change in the Poaceae

Jeffrey L. Bennetzen

Department of Biological Sciences and Genetics Program, Purdue University, West Lafayette, IN 47907-1392 USA

Invited talk —  Analyses of several thousand kb of genomic DNA sequence that we have generated for comparable regions of the maize, sorghum, rice, barley, wheat, and pearl millet genomes have indicated that local genomic rearrangements are orders of magnitude more frequent than rearrangements that can be detected by comparative recombinational maps. Duplications, deletions, inversions and translocations of small genic segments are common, but are mostly without a known mechanism. Some genomes, like that of maize, appear to be particularly unstable. Rice and sorghum, on the other hand, show good relative conservation of gene order and content in compared chromosomal segments. Even within a stable genome, some genomic regions can be quite unstable, for instance around orthologous Wx loci and in R gene clusters. In several cases, we have been able to gather evidence that suggests the molecular mechanisms of some of these changes in local genome structure. Unequal homologous recombination and illegitimate recombination are appear to be major players in many rearrangement events. Further studies are needed to determine whether these mechanisms of instability are equally influential in all grass lineages, but preliminary studies indicate that all of the mechanisms are at least present in each grass species studied. Further investigations will determine the effects, if any, these changes have upon gene and genome function. At this point, we can only conclude that local genome structure is highly dynamic in the grasses.


Polyploid speciation in wild potatoes (Solanum sect. Petota)

Ronald van den Berg

Nationaal Herbarium Nederland, Wageningen University branch, Generaal Foulkesweg 37, 6703 BL Wageningen, The Netherlands

Talk — The wild relatives of the potato (Solanum sect. Petota) comprise a group of about 200 tuber-bearing Solanum species. Polyploidy is rather common in the group with, besides a majority of diploid species, also triploids, tetraploids, pentaploids and hexaploids. Most of the polyploids are hypothesized to be allopolyploids, originated through hybridization. Hybridization hypotheses abound in sect. Petota, mostly inferred from morphological and cytological data. A few cases have been tested with synthetic hybrids and/or molecular data. The evolutionary history of sect. Petota and, indeed, the origin of the (tetraploid) cultivated potato, is by and large a tale of the development of polyploid species (groups). Unravelling the composition of polyploid genomes has become feasible using molecular data and advanced cytogenetic tools like genome in situ hybridization (GISH).


Islands in an arid world – investigations on populations of Gibbaeum cryptopodium (Aizoaceae)

Gisela Bertram & Ute Schmiedel

Botanical Institute, University of Hamburg, Ohnhorststraße 18, 22609 Hamburg, Germany

Poster — Quartz-fields of the Succulent Karoo in South Africa offer a prime model for the study of isolated island-like populations within an arid environment. Schmiedel & Jürgens (1999) showed that isolated azonal quartz gravel fields represent islands which are much different from the surrounding matrix vegetation with regard to plant communities, abiotic conditions and growth forms of the plants.
Gibbaeum cryptopodium (Aizoaceae) is a dwarf leaf-succulent chamaephyte endemic to the Little Karoo, an arid inland basin, where the species is by and large restricted to quartz fields.
Molecular markers and morphological measurements were used to test the hypothesis that each isolated quartz-field is inhabited by one distinct population of Gibbaeum cryptopodium. AFLP analyses of the genetic diversity within and among populations were undertaken. From the results obtained, the correlation between geographical and genetical distances and barriers is discussed.

Schmiedel, U. & N. Jürgens. 1999. Community structure on unusual habitat islands: quartz-fields in the Succulent Karoo, South Africa. Plant Ecology 142: 57–69


Speciation patterns of Peperomia in Polynesia

Una Bradley1 & Steve Waldren2

1Department of Botany, Trinity College, Dublin 2, Ireland
2Trinity College Botanic Gardens, Palmerston Park, Dartry, Dublin 6, Ireland

Talk — The remote islands of South-eastern Polynesia (defined here by the Pitcairn Islands, the Islands of French Polynesia and the southern Cook Islands) provide an ideal environment in which to base an evolutionary study. In South-eastern Polynesia there are 17 species within the genus Peperomia, 14 of which are endemic.
This study initially used molecular tools in conjunction with traditional methods to define phylogenetic relationships within the genus. A phylogeny of Peperomia in South-eastern Polynesia has been constructed using sequence information from both the ITS and trnL-trnF regions. The DNA sequencing study also includes data from Hawaiian species of Peperomia as well as a number of other Pacific species (collaborative study with the New York Botanical Garden). The combined study provides information on the movement and speciation of Peperomia across the Pacific while detailed molecular studies (including AFLP analysis) in South-eastern Polynesia reveal evidence of hybridisation and are used to draw conclusions on methods of speciation within the genus.


Sculpture pattern of wing petals in legumes of the eastern ghats of south India

S. John Britto

Centre for Natural Resources Study, Department of Botany, St. Joseph’s College, Tiruchirapalli-620 002, India

Talk — The floral biology of legumes is vast and relatively complex. There is a need for a re synthesis of our knowledge about the reproductive biology of legumes, not only for its application in systematics but also to clarify other aspects like species to species relationship, phylogeny and others. In recent times characters pertaining to floral biology in legumes hitherto either neglected or unused are found to possess systematic value and have wider applications at every level of taxonomic hierarchy. Sculpture pattern of wing petals in legumes, so far neglected and unused has proved valuable in establishing generic and specific delimitations. Sculpture or the ephemeral folds on the outer surface of the wing petals are a widespread feature, showing constancy within the group on the one hand and separability from others, on the other. Their function and the extent of their occurrence in different tribes need further investigation. The present paper describes the sculpture patterns of some legumes using different cytochemical, morphological and fluorescent analyses, which exhibit specific variations among them.


Nuclear DNA content variation of Eleocharis palustris agg. in Europe

Petr Bureš, Lucie Horová & Sierra Dawn Stoneberg Holt

Department of Botany, Faculty of Science, Masaryk University, Kotlá_ská 2, CZ-611 37 Brno, Czech Republic

Poster  - Following morphological measurements and chromosomal counts, carried out on native populations in Austria, Bulgaria, Croatia, the Czech Republic, Denmark, Estonia, Germany, Hungary, Ireland, Italy, Lithuania, Luxembourg, the Netherlands, Norway, Portugal, Rumania, Slovakia, Slovenia, Spain, Sweden and Switzerland, which confirmed six taxa within the Eleocharis palustris agg. in Europe (Bureš 1998, 1999, 2002), we have focused on the study of relative DNA content variability of these taxa using DAPI flow cytometry.
Both subspecies of E. mamillata, which have the same dominant chromosome number 2n=16, have very similar DNA contents. On the other hand, closely related E. palustris subsp. palustris in which 2n=16 also dominates, has a smaller DNA content than either subspecies of E. mamillata. It is also unusual that E. palustris subsp. vulgaris with a dominant 2n=38, 39 has a larger DNA content than E. uniglumis subsp. uniglumis, which has a dominant 2n=46. E. uniglumis subsp. sterneri, described by Strandhede in Bot. Not. 114: 433 (1961) as endemic to the islands of Öland and Gotland (Baltic Sea) and confirmed later by Bureš (1998, 1999) from Slovakia, Austria, Hungary and Croatia, has large variability of chromosome numbers (Strandhede 1965, Bureš 1998). Likewise DNA content variability of E. uniglumis subsp. sterneri is very large in relation to the other five taxa.

Bureš P. (1998): A high polyploid Eleocharis uniglumis s. l. (Cyperaceae) from the Central and Southeastern Europe. – Folia Geobot., 33: 429–439.
Bureš P. (1999): Eleocharis R. Br. subser. Eleocharis. Biosystematická studie stredoevropských taxonu – Ph.D. Thesis Masaryk Univ. Brno.
Bureš P. (2002): Eleocharis subser. Eleocharis in the Czech Republic: comments on geographical distribution and determination key to Central European taxa. – Zprávy Ces. Bot. Spolec., 37: 3–10.
Strandhede S.-O. (1965): Chromosome studies in Eleocharis subser. Palustres. – Opera Bot., 9/2: 1–86.


Evolution of Convolvulus L. in the Mediterranean and Macaronesia

Mark Carine

Department of Botany, The Natural History Museum, Cromwell Road, London SW7 5BD United Kingdom

Talk - Convolvulus L. (Convolvulaceae) comprises more than 200 species worldwide, with the greatest diversity found in the Mediterranean, Macaronesia and the Middle East. Within Macaronesia, a wide range of growth forms are found including lianas, erect shrubs and dwarf spiny shrublets. Of the 16 native species recorded from the region, ten are endemic to the Canary Islands and one is endemic to the Madeiran archipelago. Webb (1844) described a separate genus, Rhodorhiza, for those species endemic to Macaronesia. In contrast, Sa’ad (1967) placed the Macaronesian endemic lianas, shrubs and spiny shrublets in three different subsections within Convolvulus and more recently, Mendoza-Huer (1983) suggested that there are two distinct groups of Macaronesian endemics. As part of a broader systematic study of Convolvulus, a molecular phylogenetic study of the Macaroneisan and Western Mediterranean species is currently in progress utilizing data from the the ITS region of nrDNA and trnL-F region of cpDNA. The results of this work are presented and their implications for our understanding of the evolution of Convolvulus in Macaronesia and for the classification of the genus more widely are discussed.


Hybridisation and Introgression in Mediterranean Senecio (Asteraceae)

Mark A. Chapman & Richard J. Abbott

Sir Harold Mitchell Building, School of Biology, University of St. Andrews, St. Andrews, Fife KY16 9TH, Scotland

Poster — The distribution of nuclear (RAPD) and cytoplasmic (cpDNA RFLP) molecular markers throughout the Mediterranean ranges of Senecio gallicus, S. glaucus and S. leucanthemifolius have been studied in an attempt to determine the ancestry of two populations of Senecio found on the south coast of Sicily.
These populations have been previously described as morphologically intermediate between S. glaucus ssp. coronopifolius and S. gallicus, and may therefore be of hybrid origin. However, these two potential parent species have not been reliably reported from Sicily, whereas S. leucanthemifolius is widespread from Italy, through Corsica and Sicily and into North Africa. The distribution of RAPD markers throughout the entire range of S. leucanthemifolius is also discussed as assigning subspecific status is often complicated based on morphology alone.
Morphometric analysis shows that the Sicilian populations of unknown taxonomic status are distinct from S. gallicus and cluster more closely with S. glaucus ssp. coronopifolius. This is confirmed by the RAPD data, although possible introgression from another species cannot be ruled out.
The results of cpDNA RFLP are also presented for the unknown Sicilian taxon, Sicilian and Tunisian S. leucanthemifolius and Tunisian S. glaucus.


Allopolyploid evolution in Dactylorhiza (Orchidaceae) and Nicotiana (Solanaceae): two case studies demonstrate the importance of knowing parents and ploidy levels

Mark W. Chase1, Richard Bateman2 & Michael F. Fay1

1Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK
2Department of Botany, The Natural History Museum, Cromwell Road, London SW7 5BD, UK

Invited talk — We have been studying how allopolyploids have evolved in two distantly related groups of angiosperms, Dactylorhiza (Orchidaceae) and Nicotiana (Solanaceae), the former poorly characterised and the latter well understood using ‘traditional’ approaches. In the case of Dactylorhiza we have been employing a mixture of genetic approaches to determine what are the parents and at what ploidy levels have the hybrids been produced: DNA sequencing of plastid regions and nuclear ribosomal ITS as well as plastid and nuclear microsatellites and AFLPs. It is clear that allopolyploids have arisen a number of times from different parents, both diploids and tetraploids, but the patterns are so complex that a great deal of additional work is required before direct comparisons can be made to other groups in which this process has occurred. Nicotiana, conversely, has been well characterised, particularly by the work of Goodspeed (1940–1950s), and although he did not correctly identify all parents of allopolyploids correctly, it is clear that hybridisation involved only diploids and the allopolyploids have not crossed with either their parents or each other. In fact, the parental diploids and their polyploid offspring often occupy distant areas (for example South America for the parents of N. section Suaveolentes, which are found now only in Australia and Africa). Although allopolyploids have been formed multiple times, their ancestries have been relatively easily determined. Partly this is due to the circumstances in which hybridisation has occurred and partly due to the fact that Nicotiana is easily cultivated, which facilitates cytological studies, whereas at least some of the taxa involved in allopolyploidy in Dactylorhiza are difficult to maintain outside their native environments. In both cases, parental taxa are not particularly closely related within the context of their respective genera, a factor that may be related to why these taxa show such frequent allopolyploidy.


Species-level phylogenetics in Neotropical Annonaceae

Lars W. Chatrou1, Michael D. Pirie1, Roy H. J. Erkens1, Timo van der Niet1, Johan B. Mols2, and Jan W. Maas1

1 Nationaal Herbarium Nederland, Utrecht University Branch, Heidelberglaan 2, 3584 CS Utrecht, The Netherlands
2 Nationaal Herbarium Nederland, Leiden University Branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Invited talk - Neotropical representatives of the Annonaceae, a pantropical family of trees and lianas, have been a major focus of systematic research at the Utrecht branch of the National Herbarium of the Netherlands since the founding of the international Annonaceae project 17 years ago. Extensive revisionary work and the accumulation of numerous new collections has been complemented in recent years by the building of a phylogeny of the family as a whole. Despite the difficulty of adequately sampling with respect to species level phylogeny reconstruction, sufficient material has been collected to resolve species-level phylogenies of a number of Neotropical genera. We present results on the following three genera: Cremastosperma (ca. 35 spp., 30 of which are included in our analysis ), Duguetia (100 spp., 35 of which are included), and Guatteria (ca. 250 spp., 50 of which are included). For each of the genera phylogenies are presented on the basis of the following cpDNA markers: rbcL, trnT-L intergenic spacer, trnL intron, , trnL-F intergenic spacer, psbA-trnH intergenic spacer, and partial matK. The three phylogenies are reviewed in the context of the family phylogeny of the Annonaceae. With the exception of a few basal lineages, the majority of the ca. 2500 species of the family diverge into two major sister clades, distinct on the basis of pollen morphology, geographic distribution, and patterns of molecular evolution. Of these two clades, one is characterised by inaperturate pollen and has an apparent rate of molecular divergence (revealed by branch lengths in most parsimonious trees) about three times as high as the other clade, characterised by monosulcate and disulculate pollen. Duguetia and Guatteria are in the long-branch-clade, Cremastosperma is in the short-branch-clade. The repercussions and implications of this phenomenon will be discussed.


Discrimination of Cnidium Rhizome from Ligusticum chuanxiong and Cnidium officinale using PCR-mediated RFLP

So Yean Cho, Keum Ryon Ze, Jong Pill Lee, Joo Young Park, Sang Yong Park, Young Ja Jung, Chang Hee Cho, Kwang Won Ha

Division of Herbal Medicine Standardization, Korea Food and Drug Administration, Korea

Cnidium Rhizome is a frequently prescribed herbal medicine in Korea, Japan as well as China,which has been successfully used in these countries for the treatment of diseases related to gynecology, blood circulation and dental troubles. And it is circulated as the same chinese character, although original plants are different as Cnidium officinale in Republic of Korea or Japan and Ligusticum chuanxiong Hort. in China. A lot of herbal medicines are imported from China and it is very difficult to distinguish a Cnidium officinale Makino from a Ligusticum chuanxiong by organic or physicochemical experiments. In this report, PCR-mediated RFLP method using ITS primers and restriction enzymes such as Hae III, Nla IV, Apo I, Eco RV, Sma I and Mbo II was given a trial to identify origin of these herbal medicines. The ITS regions of nuclear ribosomal DNA were analyzed to determine original plants and to design a molecular identification method for the herbal medicine in Republic of Korea, Japan and China.


Speciation by hybridization in European orchids: evidence by nuclear and chloroplastic markers

Rossella Cianchi, Maria Cristina Mosco & Luciano Bullini

Department of Genetics and Molecular Biology, University of Rome ‘La Sapienza’, Via dei Sardi 70, I-00185 Rome, Italy

Talk — A number of hybrid species has been recently detected in orchids of the genus Dacylorhiza, by the use of codominant single copy nuclear markers (e.g. enzyme loci). They differ in ploidy level, mode of reproduction, genetic variation and single versus multiple origin. The Allotetraploid Marsh Orchids (D. elata s.l.) show sexual reproduction and have 4x=80; their parental species are D. saccifera s.l. (2n=40) and D. incarnata s.l. (2n=40), as suggested on chromosome basis by Heslop-Harrison (1953, 1954, 1957) and assessed on allozyme basis (Hedrén, 1996a, b; Bullini et al., 2002). Genetic comparison of various AMO taxa from Europe and Caucasus showed their multiple origin, both in time and space; the maternal species was generally D. saccifera s.l., as shown by cpDNA. Other hybrid Dactylorhiza species are allotriploid and reproduce by apomixis. Among marsh orchids, four triploid apomictic taxa, as yet undescribed, have been evidenced: three of them show 2 genomes from D. incarnata and 1 from D. saccifera, the fourth has 2 saccifera and 1 incarnata genomes. Their origin from occasionally fertile backcrosses of AMOs with either parental species has been suggested; according to the taxon, cpDNA was contributed from either D. saccifera or D. incarnata (Bullini et al., in press). The Western Mediterranean orchid D. insularis (3x=60) shows sporophytic polyembriony; this species derived from hybridization between D. romana (2n=40) and D. sambucina (2n=40), which contributed two and one genomes, respectively, as assessed by allozyme markers; the maternal species was D. romana. D. insularis had a single, recent origin and shows limited clonal variation (Bullini et al., 2001). Genetic relationships between Dactylorhiza hybrid taxa and their parental species, as inferred from cpDNA, are generally similar to those reported for nuclear ribosomal intergenic spacer (ITS; Bateman et al., 1997; Bateman, 2001). These findings suggest that concerted evolution, i.e. homogenization towards one parental species, has occurred in hybrid Dactylorhiza taxa at ITS level, highly biased towards the maternal parent.


When a phylogenetic tree is not a phylogeny - allopolyploidy in Nicotiana (Solanaceae)

James J. Clarkson1, Sandra Knapp2 & Mark W. Chase1

1Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, United Kingdom
2Department of Botany, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom

Talk — The origins of the amphidiploid taxa in Nicotiana (Solanaceae; about 70 species) have recently been illuminated using the technique of genomic in situ hybridisation (GISH). These have arisen from crosses that are sometimes ‘wide’ (distantly related) and in other cases more ‘narrow’. Parsimony analysis produced almost complete species-level trees from both plastid and nuclear ribosomal regions. Due to a lack of variability large regions of DNA from the plastid genome were sequenced (matK, trnL-F, ndhF and trnS-G). The internal transcribed spacer (ITS) region of ribosomal DNA constituted the second dataset. When compared the two analyses showed the same basic patterns. However the positions of the amphidiploids differed. Due to gene conversion, these hybrid taxa did not produce hybrid ITS sequences. Most had ITS types that were consistent with their maternal parent (e.g. N. rustica) but some like their paternal parent (eg. N. tabacum). Neither dataset can reliably be used to reveal hybrids, and in some cases hybrids appear in the same positions (i.e. they are not incongruent in the plastid and nuclear trees), which could lead unsuspecting researchers to conclude they are not hybrids.


Dispersal and speciation in Mediterranean Senecio

Max Coleman1, Aaron Liston2, Joachim Kadereit3 & Richard Abbott1

1Division of Environmental and Evolutionary Biology, School of Biology, University of St Andrews, St Andrews, Fife, KY16 9TH, UK
2Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331-2902, USA
3Institut für Spezielle Botanik und Botanischer Garten, Johannes Gutenberg-Universität Mainz, D-55099 Mainz, Germany

Talk — Phylogenetic analysis of Old and New World Senecio sect. Senecio was performed to explore the biogeographic history of Mediterranean/arid plant disjunctions. Phylogenies based on internal transcribed spacer (ITS) sequences of nrDNA revealed a well-supported clade corresponding to sect. Senecio. Area optimization indicated this to be of southern African origin. The Mediterranean and southern Africa were not distinguishable as sources of the main New World lineage, estimated to have become established during the Mid-Pliocene. Another previously suspected recent dispersal to the New World from the Mediterranean was confirmed for the recently recognized disjunction in S. mohavensis. The loss of suitable land connections by the Miocene, means that both New World lineages must represent long-distance dispersal, providing the first evidence of repeat intercontinental dispersal in a Mediterranean group. In contrast, migration within Africa may have utilized an East African arid corridor. Recent dispersal to northern Africa was supported for S. flavus, which formed part of a distinct southern African lineage. Novel pappus modifications in both disjunct species may have enabled dispersal by birds. An estimated Early Pliocene origin of sect. Senecio coincides with the appearance of summer-dry climate. However, diversification from 1.6 Mya highlights the importance of Pleistocene climate fluctuations for speciation.


Molecular methods to address population genetic differentiation of the Portuguese species of Ophrys (Orchidaceae)

Helena C. Cotrim1, M. Salomé Pais1, Mark W. Chase2 & Michael F. Fay2

1Laboratory of Plant Biotechnology, ICAT, Ed. ICAT, Campo Grande, P-1749-016 Lisboa, Portugal
2Jodrell Laboratory, Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3DS, UK

Poster — Ophrys (Orchidaceae) is a genus of more than one hundred species, mostly native to Europe with a concentration of species around the Mediterranean. The genus is well delimited, but infrageneric relationships are not clear. The monophyly of the genus contrasts with species relationships within Ophrys that are generally poorly resolved probably a reflection of controversial, morphologically-based classifications. Recent publications indicated 142 ‘species’ in Europe with a great number of narrow geographic species and subspecies. This situation is yet more complex as a result of the great number of hybrids described between sympatric species. Hybridisation is putatively common in Ophrys with at least 100 hybrids having been reported. Recent literature supports a well-resolved monophyletic group containing O. bombyliflora, O. speculum, O. tenthredinifera and an O. fusca-lutea lineage. Ophrys has eight species in Portugal (O. apifera, O. bombyliflora, O. fusca, O. lutea, O. scolopax, O. speculum, O. vernixia, and O. tenthredinifera).
This work is part of a wider project that aims to establish patterns of speciation within Portuguese Ophrys. In this report, we explore new approaches to species delimitation at the molecular level and collection of data on current patterns of hybridisation in Portugal. Different molecular methods were used to address the problem of genetic differentiation of these taxa: DNA sequencing, AFLPs and plastid and nuclear microsatellites. AFLPs produced good results for some of the primer combinations, although the presumptive large genome of Ophrys was reflected in the large number of fragments observed, which made interpretation of fragments patters more difficult. To overcome this, the method was modified by using more selective primers. Plastid microsatellites for introns/spacers in the trnS-trnG, trnL-trnF and rps16 regions were developed, three out of four loci were variable either between O. fusca and O. lutea or O. scolopax and all the other four species analysed. Microsatellite regions in the nuclear genome of Ophrys were also developed using the method of Fisher et al. (1996), and the selection of promising regions is currently underway. From the available methods, plastid and nuclear microsatellites seem to be the most favourable ones due to the levels of variability obtained, but AFLPs can afford a clearer picture of overall patterns of variation.


Apomixis, occasional sex, hybridisation; what’s happening with Sorbus?

Robyn S. Cowan1, Tim C. G. Rich2 & Michael F. Fay1

1Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK
2Department of Biodiversity and Systematic Biology, National Museum & Gallery, Cardiff CF10 3NP, UK

Poster — In the British Isles, the genus Sorbus is represented by about 25 taxa, 15 of which are endemic, often with very narrow distributions. There are four diploid (2n=34) sexual species, S. aria (whitebeam), S. aucuparia (rowan), S. domestica (true service tree) and S. torminalis (wild service tree), and the remainder of the species are largely apomictic, which are either triploid or tetraploid (2n=51,68).
The apomicts fall in three groups, the S. aria aggregate (those similar to and possibly derived from S. aria), the S. intermedia aggregate (thought to be derived from crosses between members of the S. aria aggregate and S. aucuparia) and the S. latifolia aggregate (thought to be derived from crosses between the S. aria aggregate and S. torminalis). Most of the apomicts are rare, local endemics, occurring in ‘diversity hotspots’, including the Wye Valley, the Avon Gorge, the Brecon Beacons and the Isle of Arran.
We are currently studying the genetics of Sorbus in the UK using: a genetic fingerprinting technique (AFLP™) that screens nuclear DNA (inherited from the maternal and paternal parents), plastid DNA markers (inherited from the maternal parent only) and nuclear DNA sequences. This enables identification of the maternal and paternal parents of the hybrids and an assessment of the genetic variability within and between the narrow endemics and the parents. From this the relative genetic contribution of the parents can be assessed, and also whether residual fertility in the apomictic taxa is allowing the establishment of new longterm partially sexual taxa. For example, preliminary data suggest that in taxa of hybrid origin, the paternal parent is usually a member of the S. aria agg., suggesting that these taxa perform better as pollen donors than recipients.
Another example involves a putatively new hybrid thought to be a cross between S. torminalis and either S. aria or S. rupicola (also in the S. aria aggregate). AFLP and a plastid marker established that S. rupicola is not a parent, and that torminalis is the maternal parent. This is probably a repeat of the event that led to an already recognised taxon, S. x vagensis, showing that the same hybridisations are recurring. These results have implications in understanding speciation through hybridisation and also for the conservation management of the taxa involved.


Research of chloroplast DNA markers by PCR-RFLP in the genus Dactylorhiza (Orchidaceae)

Nicolas Devos, Anne-Laure Jacquemart, Daniel Tyteca & Renate A. Wesselingh

Unité d’Écologie et de Biogéographie, Biodiversity Research Center, Université Catholique de Louvain, Croix du Sud, 4-5, 1348 Louvain-la-Neuve, Belgium

Poster — The genus Dactylorhiza consists of many species restricted to Northwest Europe. Members of this genus are morphologically variable and their taxonomic status is not very well defined. In the wild, species can be found in sympatry and hybrids are currently observed. If hybridisation and introgression are commonly observed in the genus, some species could have a recent origin.
We used chloroplast DNA markers (PCR-RFLP) to characterize the different Dactylorhiza species and to follow hybridisation and introgression along maternal lines. Until now, 17 haplotypes have been found. The majority of these haplotypes are specific to the taxa investigated. The phenogram formed by a neighbor-joining analysis show us three groups of genetically distinct haplotypes. One of these groups is characteristic for D. incarnata, the two others for D. fuchsii and polyploďd taxa (D. maculata, D. majalis, D. praetermissa and D. sphagnicola).


Constraints in the radiation of apomicts

Peter van Dijk

Netherlands Institute of Ecology (NIE-CTO), Heteren, The Netherlands

Invited talk — Apomixis is the production of asexual seeds, genetically identical to the mother plant. Apomictic lineages are reproductively isolated from sexual and other asexual lineages. Variation in apomictic taxa is very obvious and has led to the recognition of hundreds of microspecies (e.g. Rubus, Taraxacum, Hieracium). Apomixis is relatively rare in the plant kingdom. Although reported in more than 400 species, it occurs in only 0.1 per cent of the angiosperms.
Apomicts are derived from sexual ancestors. Several synergistic mutations are necessary to suppress sexual reproduction. These mutations are individually deleterious, which may have constrained the evolution of apomixis in the plant kingdom. Nevertheless, the phylogenetic distribution of apomixis in the angiosperms suggests many independent origins. Mechanistically, there are several ways to achieve apomixis, which have evolved repeatedly.
Secondary apomicts arise through the crossing of apomictic pollen donors with sexual or facultative apomicts. Although this results in bottlenecks and instant reproductive isolation, secondary apomixis has caused limited radiation. This is probably because the evolutionary life span of apomictic lineages is limited due to lack of adaptability and the accumulation of deleterious mutations. Most extant apomictic lineages have split of only recently from sexual relatives. No completely apomictic genera exist in the angiosperms. Apomictic lineages may be evolutionary inert, because they are polyploids and because they lack horizontal transfer of mutations.
Variation in apomictic taxa is mainly frozen variation inherited from sexual progenitors and not acquired evolutionary novelty. Thus conspicuous variation in apomicts does not imply radiation, but rather fragmentation of pre-existing variation.


Phylogeny of the Juncaceae with special emphasis on Luzula DC. and Juncus L.: A preliminary assessment inferred from plastome sequence data

Lenka Drábková1, Jan Kirschner1, Cestmír Vlcek2, Ole Seberg3 and Gitte Petersen3

1Institute of Botany, Academy of Sciences, Zámek 1, 252 43 Pr_honice, Czech Republic
2Centre for Integrated Genomics and Institute of Molecular Genetics, Flemingovo nám. 2, 166 37 Praha 6, Czech Republic
3Botanical Institute, University of Copenhagen, Gothersgade 140, 1123, Copenhagen K, Denmark

Talk — Phylogenetic analyses derived from plastome rbcL and trnL intron and trnL-trnF intergenic spacer were performed to examine relationships among taxa representing most of subgenera and sections of Luzula and Juncus (excl. sect. Forskalina and sect. Caespitosi) Juncaceae. Taxa were chosen to reflect morphological and geographical diversity of both genera. The most important conclusions concerning the phylogeny of Juncaceae were: (1) high support for the major clade (99% jackknife) comprising Luzula sections, (2) the resolution of highly supported subg. Juncus (98% jackknife) excluding a part of sect. Graminifolii and sect. Juncus, (3) the position of J. capensis and J. lomatophylus as a sister group to the remaining small juncaceous South Hemisphere genera, (4) separate position of sect. Juncus (a clade comprising J. maritimus and J. kraussii).
Current subfamily classification generally is not supported, but subgenera Juncus and Agathryon (=Poiophylli) form clades of their own but their circumscription differs from the traditional views. Sectional relationships range from robust (sect. Stygiopsis) to unresolved (sections within Luzula). More data are needed in order to test the monophyly of Luzula. Juncus is shown to be a non-monophyletic genus and it the monophyly criterion is adapted, it must be divided into various smaller monophyletic groups. However, at present the phylogeny is based only on a limited set of plastome data. In particular, morphological characters do not provide support for plastome phylogeny. The analysis of rbcL sequences provides new insights into phylogeny of the Juncaceae, especially in the genera Juncus and Luzula.


Morphological and genetical identity of Rhinanthus individuals in mixed populations

Véronique Ducarme & Renate A. Wesselingh

Université catholique de Louvain, Biodiversity Research Centre, Unité d'Écologie et de Biogéographie, Croix du Sud 4-5, 1348 Louvain-la-Neuve, Belgium

Poster — The principal goal of this project is to study the origin and the dynamics through time of natural hybridization between two annual plants Rhinanthus minor and Rhinanthus angustifolius (Scrophulariaceae). The occurrence of hybrids between these species and their flower morphology was largely documented by Kwak (1978). In our study, we will correlate flower morphology with individual genetic identity. Thus, we will be able to track introgression events even when hybrid flower morphology has become indistinguishable from that of pure species. Jointly, we will study the mechanisms of reproductive isolation between these species in order to explain the direction of introgression.
First, we developed molecular markers (RAPDs) to differentiate the two species, distinguish the hybrids and attribute a genetic index. Simultaneously, we attributed a morphological index measured on flowers. We studied the correlation between these two indexes and compared populations of different ages.


A Macaronesian fern in Portugal: relictual or introduced?

Cecília Durăes1, 3, Stephen J. Russell2, Frederick J. Rumsey2, Mary Gibby3, Fátima Sales4, Johannes C. Vogel2

1Institute of Ecology and Resource Management, University of Edinburgh, Darwin Building, Mayfield Road, Edinburgh, EH9 3JU, UK
2Department of Botany, Natural History Museum, Cromwell Road, London SW7 5BD, UK
3Royal Botanical Gardens, 20A Inverleith Row, Edinburgh EH3 5LR, UK
4Departamento de Botânica, Universidade de Coimbra, Arcos do Jardim, 3000 Coimbra, Portugal

Poster — Asplenium hemionitis L. is a diploid fern distributed on all Macaronesian archipelagos, with scattered outlying populations in northern Africa and only one site in mainland Europe, near Sintra, Portugal. The fossil record shows it was present in Europe during the Tertiary. A. hemionitis was first discovered in Sintra in the 17th century, but a recent survey revealed that extant populations are now confined to man-made walls in a Moorish castle complex. We employed allozyme electrophoresis to a) determine the prevailing breeding system, b) assess genetic variation within and between populations, c) establish whether the populations at Sintra can be regarded as autochthonous relictual populations of this Macaronesian element and d) make recommendations regarding the conservation of the species.


Identification of Gaharu (Aquilaria and Gyrinops) dry wood samples using trnL-trnF polymorphisms

Marcel C.M. Eurlings & Barbara Gravendeel

Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Talk — Gaharu is a fragrant resin in the wood of Southeast Asian tree species in the Thymelaeaceae family that develops after fungal infection. Production is recorded from several species of the genera Aquilaria, Gyrinops, Gonystylus and Phaleria. Gaharu is of high economic importance in Asia due to its use for the production of incense and traditional medicines. It is ranked among the most highly valuable traded forest products worldwide. High prices have stimulated intensive gaharu harvesting and eight Aquilaria species have declined to such an extent over the last decades that they were placed on the IUCN Red List Category. The most threatened species, A. malaccensis was even placed on CITES Appendix II in order to control international trade to avoid extinction. As gaharu is mostly traded as wood chips, accurate monotoring of trade in A. malaccensis is seriously hampered as identification to species level is impossible by conventional microscopy. The CITES Plants Committee therefore financed a pilot study on the development of DNA identification tools. DNA was isolated from recent and up to a 90-years old herbarium and dry wood samples of different Aquilaria and Gyrinops species. Gaharu samples bought at local markets in Papua New Guinea were also included. The plastid trnL-trnF intergenic spacer region was successfully amplified from several of these samples using specially developed primers. After sequencing, several polymorphisms useful to distinguish species and geographical origin of the samples were found. Phylogenetic analyses of the sequences obtained indicate that species of Aquilaria and Gyrinops are intermixed in one monophyletic group. These findings indicate that both genera should be merged and that the single morphological character separating them (a different number of stamens) does not reflect evolutionary relationships.


Molecular phylogeny of the genus Caulerpa (Caulerpales, Chlorophyta) inferred from chloroplast tufA gene

Patrizia Famŕ1, Brian Wysor2, Wiebe H. C. F. Kooistra3 and Giuseppe C. Zuccarello4

1Laboratoire de Systématique Moléculaire, Département de Zoologie et Biologie Animale, Université de Genčve, 1224 Chęne-Bougeries, Switzerland
2 West Boothbay Harbor, Maine, USA
3Marine Botany, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy
4Nationaal Herbarium Nederland, Leiden University branch, 2300 RA Leiden, The Netherlands

Talk — The genus Caulerpa consists of about 75 species of tropical to subtropical siphonous green algae. To better understand the evolutionary history of the genus, a molecular phylogeny was inferred from chloroplast tufA sequences of 23 taxa. A sequence of Caulerpella ambigua was included as a potential outgroup. Results reveal that the latter taxon is, indeed, sister to all ingroup sequences. Caulerpa itself consists of a series of relatively ancient and species-poor lineages and a relatively modern and rapidly diversifying clade, containing most of the diversity. The molecular phylogeny conflicts with the intrageneric sectional classification based on morphological characters and an evolutionary scheme based on chloroplast ultrastructure. High bootstrap values support monophyly of C. mexicana, C. sertularioides, C. taxifolia, C. webbiana and C. prolifera whereas most other Caulerpa species show para- or polyphyly.


Towards a phylogeny of Conostylis – a species-rich genus of Haemodoraceae (Western Australia)

Michael F. Fay1, Stephen D. Hopper2, Vincent Savolainen1 and Mark W. Chase1

1Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK
2Kings Park & Botanic Garden, West Perth, WA 6005, Australia

Talk — Subfamily Conostylidoideae of Haemodoraceae are endemic to the Mediterranean region of Western Australia, and Conostylis (with 46 species out of 77 species in the subfamily) is the largest genus in the family. To address a range of questions relating to mechanisms and timing of speciation, pollination syndromes, biogeographical patterns, edaphic requirements etc., we are working towards a phylogeny of the genus using DNA sequence data. We now have data sets for plastid matK and nuclear ribosomal ITS. Apart from the positions of a small number of taxa thought to be of hybrid origin, the topologies of the trees from separate analyses are highly congruent, and combining the data sets results in increased resolution and bootstrap support. Conostylis is strongly supported as monophyletic, and the monotypic genus Blancoa is strongly supported as sister group to Conostylis. Within Conostylis, the current classification into six subgenera is not supported. We recover two major clades, one predominantly composed of subgenus Pendula section Catospora and the other composed of two subclades, one composed of subgenus Pendula section Appendiculata and the other predominantly of subgenus Conostylis. The smaller subgenera Androstemma, Greenia, Brachycaulon and Bicolorata are all found in the Catospora clade, with several of the species occurring on the first branches of that clade. The three species of subgenus Pendula section Divaricata fall in three different positions, two in the section Cataspora clade and one in the subgenus Conostylis subclade. Although we still need to collect further data to produce a resolved tree, our existing data allow us to redefine subgeneric groupings and to reassess the characters that have been used to define the smaller subgenera and sections.


Evolution, hybridisation, and clonal distribution of apo- and amphimictic Pilosella species in a Central European mountain range

Judith Fehrer1, Anna Krahulcová1, Franti_ek Krahulec1 and Siegfried Bräutigam2

1Institute of Botany, Czech Academy of Sciences, Zámek 1, 25243 Pr_honice, Czech Republic
2Staatliches Museum für Naturkunde, Postfach 300154, 02806 Görlitz, Germany

Talk — Pilosella hawkweeds (Asteraceae, Lactuceae) are known for their difficult taxonomic structure which is caused by their mode of reproduction (facultative apomixis of the aposporous type) in combination with frequent hybridisations. In an area where many of these species occur together, i.e., the three-border land of Germany, Poland and Czechia, the genetic structure of several species and their presumed relationships was analysed by PCR-RFLPs and sequencing of cpDNA intergenic spacers and by Southern hybridisations with mini- and microsatellite probes. Additional information was obtained from morphological and cytological analyses (including ploidy level determination), experimental hybridisations and reproduction studies.
At different geographic scales, the apomicts differed in their variability: from a single clone across the whole area via more widespread clones, but several origins, to multiple origins, even within the same locality. As a tendency, such apomicts considered as main species were less variable, followed by old fixed hybrids covering considerable areas whereas other intermediate taxa were of more recent origin or apparently hybridised frequently.
Surprisingly, cpDNA haplotypes were usually conserved within species and did not yield any detectable geographic pattern. Furthermore, in several cases the seed parent did not have the haplotype of the sexual crossing partner. Only one single hybridogenous species showed one or the other type indicating that different parental species had acted as seed parents.
In a phylogenetic framework based on sequences of the trnT-trnL intergenic spacer, Pilosella was divided into two monophyletic groups which were more divergent from each other than each was from the other hawkweed (sub)genera Hieracium and Chionoracium. One of these groups had some ancestral features (particularities of structural mutations) whereas the other was clearly derived. This suggests an early divergence of haplotypes predating the speciation within Pilosella and their general maintenance whithin species boundaries despite the extremely reticulate species structure.


Putting the "adaptive" into "adaptive radiation": divergence in light regime and photosynthetic adaptations in the Hawaiian lobeliads

T.J. Givnish and R.A. Montgomery

Dept. of Botany and the Gaylord Nelson Institute for Environmental Studies, 315 Birge Hall, 430 Lincoln Drive, University of Wisconsin, Madison, WI 53706, USA

Invited talk - The Hawaiian lobeliads are considered one of the most spectacular cases of adaptive radiation in plants. From a single colonist, they have invaded habitats ranging from open alpine bogs to densely shaded rain-forest interiors, and evolved a striking diversity in leaf morphology. Yet very little is known about their ecology or - indeed - whether they have undergone an adaptive radiation in photosynthetic traits related to life in sun vs. shade. To address this question, we conducted a series of field and common-garden experiments on 11 species representing each Hawaiian sublineage. In field populations, average light levels for each species vary from 3.0 to 24.2 mol day-1, while Amax varies from 3.1 to 13.5 g CO2 g-1 s-1. Across species, variation in SLA, leaf longevity, carboxylation efficiency, and the compensation point, saturation point, and convexity of the static photosynthetic light response correlate significantly with light levels in the expected directions. To analyze the extent to which these differences are genetic (rather than merely being induced by the different light regimes inhabited by each species), we studied the photosynthetic responses and growth of plants at 6.5, 14, 33, and 80% full sunlight. Within a given light regime and across species, maximum photosynthetic rate and several other parameters varied as expected with native irradiance, with genetic differences among species for Amax apparently accounting for roughly 50% of the variance observed in the field. Species differed in their plastic responses to light regime, with one species outperforming all others at 6.5% sunlight; another species best at 14 and 30% sunlight; and a third species best at 80% sunlight. The sequence of these species corresponds to the range of irradiances they occupy in the field, as expected. This study is the first to provide evidence of adaptive divergence in photosynthetic light responses, reaction norms, and associated leaf traits among members of an adaptive radiation that have invaded different light regimes.


Molecular dating of Coelogyninae (Orchidaceae)

Barbara Gravendeel and Ed F. de Vogel

Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Invited talk — Coelogyninae (c. 550 species) is a Southeast Asian subtribe of subfamily Epidendroideae in the Orchidaceae. According to recent molecular phylogenetic studies the tribe is monophyletic. Its sixteen genera are all sympodial, have pseudobulbs of one internode, terminal inflorescences and a winged column. Speciose genera of the Coelogyninae such as Coelogyne and Dendrochilum are often the most important elements in epiphytic vegetations in terms of biomass and species numbers. This makes the Coelogyninae an appropriate model for testing plant biogeographical patterns in Southeast Asia. Collisions between several ocean and land plates have created an intricate geological history for Southeast Asia and the West Pacific islands. Based on sequences of the plastid trnL-trnF intron and matK gene and nrITS1-5.8S-ITS2 region, we use a geology-calibrated molecular clock to address questions of geographic origin and age of several monophyletic clades in Coelogyninae. Data were obtained from 85 species in 14 genera covering the complete geographical range of the subtribe. Parsimony analysis of the combined data indicate that the deepest split is between Pleione, a small Himalayan genus, and all other Coelogyninae. Age estimates based on maximum-likelihood analysis are presented for this divergence. In addition, the dispersal of Coelogyne to the Pacific and the diversification of Geesinkorchis in Borneo and Sumatra are discussed.


Reticulate relationships between two widespread taxa in the genus Gentianella: G. austriaca and G. germanica

Josef Greimler & Chang-Gee Jang

Department of Higher Plants Systematics and Evolution, Institute of Botany, Unviversity of Vienna, Rennweg 14, A-1030 Vienna, Austria

Talk — In the genus Gentianella there is evidence for reticulate relationships on different stages in their evolution. Allopolyploid origin of tetraploid G. austriaca showing fixed heterozygosity can be assumed from isozyme data. Wether this is also true for other taxa of Gentianella sect. Gentianella (17 species plus some uncertain taxa in Europe: all tetraploids) still remains to be investigated. In the current research we focuse on a probably much younger level of reticulate relationsships. The gradual change in G. germanica when coming closer to G. austriaca has long been recognized and has been treated taxonomically in different ways. We reevaluate morphological evidence for this phenomenon in a large Eastern Alps transect sample and investigate gene flow between the two taxa by using AFLP fingerprint data.
Multivariate statistics of morphometrical data as well as non-metrical characters clearly show that there is a wide area covering many thousands of square kilometers with transitional populations. In general vegetative characters display a stronger response to environmental variables than do floral characters which both have been used in taxonomy. Introgression between G. germanica and G. austriaca seems the most plausible reason for the intermediate characters found in the floral features of these populations. Characters of the calyx which have mainly been used for systematics clearly show geographical differentiation besides a considerable within population and within region variation. The AFLP analysis provided about 300 informative markers. Data analyzed so far for a subset of the investigated populations indicate a high gene flow between G. austriaca and the transitional populations that have been included traditionally in G. germanica.


Conflicts in Combining Morphological and Molecular data Sets in the Thomsonieae (Araceae)

G.B.J. Grob, W.L.A. Hetterscheid, P. Hovenkamp, R.W.J.M. van der Ham, M.C. Roos & P. Baas

Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Talk — Tribe Thomsonieae (Araceae) consists of two genera of tuberous herbs: 1. Amorphophallus, a large and diverse genus of approximately 170 species, with a wide palaeotropical distribution, and 2. Pseudodracontium, a small genus, consisting of seven species only, all occurring in Indochina. At present we have a morphological data set of 165 species, and a four gene molecular data set for 54 species. In this study, results from phylogenetic analyses of these data sets are presented, and the differences discussed. Due to the disparity in numbers of the molecular and the morphological dataset, combining these datasets is problematical. We will discuss some of the problems encountered, and propose some new methods of combining the phylogenetic information contained in each data set. The results of these methods will be compared with those from traditional methods of combination.Finally, the implications of these results for Thomsonieae phylogenetics and future research will be discussed.


Phylogeography of the submeditteranean bryophyte Pleurochaete squarrosa (Pottiaceae) in Europe

Michael Grundmann & Johannes C. Vogel

The Natural History Museum, Department of Botany, Cryptogamic Plant Research Division, Cromwell Road, London SW7 5BD, UK

Poster — Phylogeographic methods have provided the opportunity to elucidate the effects of large-scale historical events (such as Pleistocene climate change) on the distribution and subdivision of biota and put in context the role of reproductive biology in the genetic structuring of species. A broad spectrum of organisms have provided grist to the phylogeographic mill including animal and vascular plant taxa, but as yet there are few published studies of bryophyte phylogeography.
Pleurochaete squarrosa is a bryophyte widespead and abundant in the Mediterranean Basin and scattered and rare elsewhere in Europe. It grows on open, often disturbed sites over calcareous soils. In southern Europe it is known to reproduce sexually via spores and asexually via fragments, whereas in central Europe sporophytes have never been recorded. Due to its unusual distribution pattern in central Europe several routes of post-glacial migration from putative refugia in the south have been postulated.
Nucleotide variation of the internal transcribed spacer region (ITS 15.8S nrDNA-ITS 2) of the nuclear ribosomal DNA was used to assess the genetic variability within and between populations throughout the European distribution of the plant in order to find evidence for possible post-glacial migration routes and putative southern refugia.


Amorphophallus (Araceae): the pollen point of view

R.W.J.M. van der Ham, G.B.J. Grob & W.L.A. Hetterscheid

Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Talk - Two main Araceae pollen types exist: 1. aperturate and 2. inaperturate. The aperturate type is plesiomorphic in the family. Amorphophallus pollen belongs to the inaperturate type. Its exine ultrastructure (presence, size, shape and distribution of dark granules) and ornamentation are much diverse. Ten main ornamentation types are present: psilate, striate, striate with psilate caps, fossulate, areolate, verrucate, echinate, reticulate, scabrate and striate/scabrate. Two of the three echinate subtypes are much alike the echinate pollen of the four closests outgroups used in the molecular work on the genus (Grob et al.: 48 spp., 4 genes): Arisaema, Filarum, Hapaline and Typhonium. However, echinate Amorphohallus pollen is not basal in the molecular tree, which suggests that the outgroups are only distantly related to the ingroup. No pollen traits indicating the monophyly of Amorphophallus or any of the main clades in the molecular tree were found. The main clades are dominated either by psilate or striate pollen, which occur basally as well as distally. The less common types are found more distally and mostly in single species. This suggests that either psilate or striate ornamentation is plesiomorphic. Outgroup comparison does not allow a choice, but thin psilate exines occur more or less basally in three of the four main clades. The generally thicker striate type is ultrastructurally heterogeneous, and seems to have evolved several times. Within both striate main clades, reversals to the psilate type occur, which are mostly characterised by greater exine thickness, compared with the basal psilate type. Within the African clade, thick psilate exines seem to have evolved directly from thin ones. Considering this, psilate pollen might be plesiomorphic in Amorphophallus. The rather common fossulate type is heterogeneous, and shows transitions to the psilate as well as the striate type. Also ultrastructurally, it proved to be diverse, and its diffuse distribution in the molecular tree confirms that it is polyphyletic. Striate pollen with psilate caps, which is nested in a striate clade (continental SE Asia), is a synapomorphy of Pseudodracontium (Indochina). In view of its typical exine ultrastructure, the psilate caps might have evolved in an albispathus/longituberosus-like ancestor. Reticulate (A. ochroleucus, Vietnam), scabrate (A. galbra, Queensland) and striate/scabrate ornamentation (A. smithsonianus, India) are considered as autapomorphies derived from psilate or striate forms. The other types, areolate, echinate and verrucate, occur in single species in the molecular tree, but have also representatives among the species not included in the analysis. Areolate pollen (6 spp., continental SE Asia) shows two alliances, one in a psilate main clade and another in a striate main clade. Echinate pollen (5 spp., Africa and Madagascar) is heterogeneous, showing three subtypes, one of which can be easily derived from a psilate type. Verrucate pollen (Africa: 5 spp. and India: 1 sp.) is clearly diverse. Derivation from psilate forms seems most likely. Several species appeared to be distinctly polymorphic: A. abyssinicus (verrucate, fossulate to coarsely striate), A. beccarii (psilate, striate-areolate) and A. baumannii (fossulate, coarsely striate, psilate, with or without distinct dark granules). These observations indicate that exine features are not always rigidly fixed, which might provide possibilities for rapid selection and evolution.


Species-level Phylogenetics in African Restionaceae

Christopher R. Hardy, Philip M. Moline and H. Peter Linder

Institute of Systematic Botany, University of Zurich, CH-8008 Zurich, Switzerland

Poster — The Cape Floristic Region (CFR) is characterized by unusually high levels of endemicity and species richness. Although there are some data available on the geomorphological and climatic history of the CFR, details of phylogenetic patterns within the plant groups that have radiated within the region are mostly lacking. As such, hypotheses regarding the origin and persistence of the species richness in the CFR remain speculative at best. As part of a larger, collaborative effort to test these hypotheses, we are investigating phylogenetic relationships within the African Restionaceae, a species-rich clade constituting a characteristic and often dominant element of the vegetation in the CFR. With over 350 species, the challenge lies in the discovery of variation useful for resolving relationships at all levels in the clade, in addition to acquiring robust estimates of the ages of cladogenic events based on underlying rates of molecular evolution. As such, we are employing variation at multiple loci from the plastid and nuclear genomes, in addition to morphological and anatomical variation. Our preliminary results indicate the value of a total evidence approach: morphological information is particularly useful in providing resolution among species, while the deeper nodes of the tree are more strongly supported by DNA sequence variation. These phylogenetic inferences, in turn, should facilitate the identification of factors governing the relative rates of speciation and extinction in this species-rich clade.


Molecular markers and cytogenetical studies in Allium

Sjaak van Heusden1, Ludmila Khrustaleva1,2 and Chris Kik1

1Plant Research International, P.O. Box 16, 6700 AA Wageningen, the Netherlands
2Timiryazev Agricultural Academy, Timiryazev Street 44, Moscow, Russia

Invited talk — Some aspects of advanced breeding methods in Allium will be discussed. The two main topics will be: marker assisted breeding and molecular cytogenetics. Marker-assisted breeding (MAB) is considered as an important tool in modern plant breeding and therefore we have constructed a high density AFLPTM map based on an interspecific cross between A. cepa (onion) and A. roylei (van Heusden et al. 2000). On this map the position of the gene which confers resistance to downy mildew (Peronospora destructor) is known. A diagnostic marker for this gene is developed by using a sequence of a linked RAPD-marker. We have also assigned the eight onion linkage groups to their physical chromosomes using monosomic addition lines (van Heusden and Shigyo et al. 2000). More and more genomic initiatives generate huge number of sequences of which many have a prediction function, these kind of markers are preferred compared to anonymous markers like AFLP and RAPD. The number of such expressed sequences located on the onion map is over 30 now and still growing. Markers with known sequences make comparisons between different crosses more feasible, examples will be given about correspondence between the three now existing onion genetic linkage maps. Furthermore a start has been made to make an inventory of the level of Single Nucleotide Polymorphisms (SNPs) in different onion cultivars.
Wild relatives of Allium cepa are known sources of agronomically beneficial traits. By means of genomic in situ hybridisation (GISH) the possibility to exploit wild relatives for the breeding of their cultivated relatives can be studied in great detail. For onion valuable wild relatives are A. fistulosum and A. roylei. We developed a multi-colour GISH protocol which enabled us to analyse the introgression process of A. fistulosum and A. roylei into onion (Khrustaleva & Kik 1998).

Khrustaleva, L.I. & C. Kik. 1998a. Cytogenetical studies in the bridge cross Allium cepa x (A. fistulosum x A. roylei). Theor. Appl. Genetics 96: 8–14.
Van Heusden, A.W., J.W. van Ooijen, M. Vrielink-van Ginkel, W.H.J. Verbeek, W.A. Wietsma & C. Kik, 2000. Genetic mapping in an interspecific cross in Allium with amplified fragment length polymorphism (AFLPTM) markers. Theor. Appl. Genet. 100, 118–126.
Van Heusden, A.W., M. Shigyo, Y. Tashiro, R. Vrielink-van Ginkel & C. Kik 2000. The use of monosomic addition lines in the assignment of AFLP linkage groups to the chromosomes of Allium cepa L. Theor. Appl. Genet. 100, 480–486.


Polyploid formation and establishment in sympatry with ancestral diploid taxa

Harriet V. Hunt1,2, Michael E. N Majerus1, Stephen J. Russell2, Fred J. Rumsey2 and Johannes C. Vogel2

1Department of Genetics, Downing Street, Cambridge CB2 3EH, UK
2Department of Botany, Natural History Museum, Cromwell Road, London SW7 5BD, UK

Poster — Asplenium majoricum Litard. (Aspleniaceae) is an allotetraploid fern derived from Asplenium x protomajoricum, the F1 hybrid between the diploids Asplenium fontanum and Asplenium petrarchae subsp. bivalens. Asplenium majoricum is a rare Spanish endemic, known from only a few sites on the island of Majorca and in the south of Valencia province on the mainland.
At certain sites in Valencia, A. majoricum and A. x protomajoricum are found growing together with A. fontanum and A. petrarchae subsp. bivalens. This sympatry of the allopolyploid and the F1 hybrid with both parental taxa provides a unique system for the study of speciation in action. We have collected extensively from these sites in 1999 and 2002, and are using allozyme electrophoresis and cpDNA sequencing to test the hypothesis that there have been multiple independent origins of A. x protomajoricum and A. majoricum. We are also investigating the relationship between mainland and Balearic Asplenium majoricum - did the latter colonise from Valencia or arise de novo on Majorca?


Timing the evolutionary divergence of crown group Gnetales: integration of molecular and fossil data

Stefanie M. Ickert-Bond & Martin F. Wojciechowski

Arizona State University, Department of Plant Biology, Box 871601, Tempe, Arizona 85287-1601, USA

Poster — Efforts to date (and resolve) the evolutionary divergences of major land plant lineages using molecular sequence data have produced widely different age estimates. This has been attributed in part to dramatic differences in rates of molecular evolution among individual genes and lineages. Certain lineages, especially some ferns and Gnetales, show much higher than average rates of evolution in all data sets examined so far as well as in different codon partitions in protein coding genes. The Gnetales represent one of five extant groups of seed plants and recent studies have yielded strongly supported, but conflicting, hypotheses as to their phylogenetic relationships: in one, Gnetales are inferred to be the sister group to the remaining seed plants, in the other, Gnetales are nested close to conifers within a monophyletic gymnosperms. We have conducted phylogenetic analyses (maximum parsimony and maximum likelihood) on sequence data from two chloroplast genes, one a highly conservative photosystem gene, psaA, and a fast evolving plastid coding gene, rps4, across all major land plant lineages (2 lycophytes, 3 ferns, 5 angiosperms, all three genera of Gnetales, and nineteen other gymnsperms). Results of our analyses (based on all codon positions) were mostly congruent with parsimony and maximum likelihood results based on the same genes for different taxonomic samples as well as results based on other chloroplast genes. Using trees derived from both parsimony and likelihood analyses, and recently developed methods that allow for incorporation of rate heterogeneity and age constraints based on evidence from the fossil record, we estimate the age of crown group Gnetales. Preliminary estimates using models that are more clock-like give a date of 139 million years ago (mya) for the crown group Gnetales based on rps4, and an age of 179 mya for the psaA data. In contrast those models that incorporate rate heterogeneity indicate an age of 119 mya (rps4), while estimates on psaA data indicate that ages of the Gnetalian clade are again younger, 174 mya, than the fossil record from the Early Cretaceous (113 mya) indicates. Discrepancies of previous age estimates based on molecular sequence data (e.g., rbcL, 18S rDNA) are compared with results of this study and possible sources of error are discussed.


Molecular biogeography and evolution of Nertera (Rubiaceae): from New Zealand to Tristan da Cunha

Gerhard Jakubowsky, Michael Kiehn & Tod F. Stuessy

Institute of Botany, Department of Systematics and Evolution of Higher Plants, Rennweg 14, A-1030 Vienna, Austria

Talk — Nertera is a small genus of 13 species. The only widespread species, N. depressa, has an extremely disjunct distribution area and occurs in New Zealand, Australia, Indonesia, the Philippines, Taiwan, Hawaii, Meso- and South America, and Tristan da Cunha. All other species are endemic to relatively small areas; e.g., six to New Zealand, and two to the Tristan da Cunha archipelago. Material from populations of most species and of several populations of N. depressa from all over its distribution area were collected. ITS and trnL-F sequence data was used to build a phylogeny. The method of amplified fragment length polymorphism (AFLP) was also used as addition to the DNA data and for population studies on Tristan da Cunha. The phylogeny based on sequence data suggests that the genus evolved in New Zealand and spread into the Atlantic area and to South America. N. depressa, considered to be morphologically homogenous throughout it's distribution range, turned out to be genetically diverse; results indicate that populations from Meso- and northern South America (Costa Rica, Venezuela) and populations of southern South America (Chile) derived from two independent long distance dispersal events. AFLP data support the major clades of the phylogeny and show that the Tristan da Cunha populations are recent arrivals from southern South America; resolution of the N. depressa populations of Tristan da Cunha and the two endemic species (N. assurgens and N. holmboei) is weak and could indicate the recent development of the endemics.


Evolutionary Relationships in Gentianella section Gentianella

Chang-Gee Jang1, Barbara Hermanowski2 & Josef Greimler1

1Department of Higher Plants Systematics and Evolution, Institute of Botany, Unviversity of Vienna, Rennweg 14, A-1030 Vienna, Austria
2Department of Ultrastructure Research and Palynology, Institute of Botany, Unviversity of Vienna, Rennweg 14, A-1030 Vienna, Austria

Poster — The European Gentianella section Gentianella is commonly divided into 3 groups around the most common taxa: (1) Gentianella campestris, (2) Gentianella amarella, (3) Gentianella germanica. Whereas (1) and (2) are essentially distributed in northern Europe, the (3) Gentianella germanica-group exhibits its highest diversity in the central and southeast European mountains, especially the Alps, where many alpine endemics can be found. We here reevaluate morphological characters and investigate genetical data for better understanding between and within groups relationships.
Flower morphology provides a lot of characters as there are: tetramerous versus pentamerous flowers, calyx form, presence / absence of papillae on the calyx, type of papillae, proportion of calyx lobes to tube, size and color of corolla, presence / absence of gynophor. Despite displaying a high within an between population variation these characters are much more stable in different environments than vegetative characters like plant size, number of internodes, leaf lengths in relation to internodes that have also been used in taxonomy. In general the vegetative characters are correlated to some degree with seasonal dimorphism within a taxon but are not very usefull in taxonomy of the section.
The cpDNA trnL-F and ITS data well seperate the formerly included genera Gentianopsis and Comastoma from the genus Gentianella. But they do not help in resolving the genus into the above mentioned major groups or the relationships within the G. germanica-group. As so far samples of other taxa of the G. campestris- and G.amarella-group are still missing the groups might become clearer in a larger sample. Anyway the resolution will not become better. The molecular divergence is very low with just a few short indels and very few base pair changes. So the high morphological divergence is strongly contrasted by the low molecular differences in these as a rule highly variable intergenic sequences. This fact might be due to the supposed rather young evolutionary divergence of the taxa during the Quaternary or even late Quaternary. In any case the sequences only represent a very small part of the whole genome. So AFLP fingerprint data will be also used to investigate relationships within the section.


The temporal course of Quaternary plant speciation

Joachim W. Kadereit & Hans-Peter Comes

Institut für Spezielle Botanik und Botanischer Garten, Johannes Gutenberg-Universität Mainz, D-55099 Mainz, Germany

Invited talk — Molecular phylogenies based on ITS sequences, a molecular clock approach, and lineages through time plots of Gentiana sect. Ciminalis (Gentianaceae), Primula sect. Auricula (Primulaceae) and Soldanella (Primulaceae) have been used to investigate the temporal course of speciation in European high mountain plant taxa of similar overall geographical distribution. The following results were obtained:

1) The three taxa investigated are of different absolute age.
2) In all three taxa all (Gentiana, Soldanella) or almost all (Primula) speciation events took place in the Quaternary.
3) The net diversification rate is very similar across all three taxa.

Speciation is not evenly distributed across time. Instead, speciation took place only in the early part of the history of the three taxa. Their more recent history shows only intraspecific differentiation. This is attributed to the continuous filling of ecological and/or geographical space or the decrease of range sizes reducing the likelihood of speciation. This results in a characteristic deviation of observed in comparison to expected diversification within the three taxa (assuming constant speciation and extinction rates): Whereas in the early part of their history (approximately the first half) observed diversification does not deviate from expected diversification, observed diversification in their more recent (approximately the second half) history falls short of expected diversification.
We conclude that irrespective of the strong climatic oscillations of the Quaternary resulting in substantial distributional change, plant evolution in this period was essentially continuous consisting in the gradual accumulation of lineages and the gradual filling of ecological and geographical space.


Tree diversity of different land use systems at Lore Lindu National Park, Central Sulawesi, Indonesia

Paul J.A. Keßler1, Ramadhanil Pitopang2, Merijn Bos1 & S. Robbert Gradstein3

1Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands
2Universitas Tadulako, Faculty of Agriculture, Kampus Bumi Tondo, Palu, Indonesia
3Albrecht von Haller Institute of Plant Sciences, Dept. of Systematic Botany, Untere Karsp_le 2, 37073 Göttingen, Germany

Poster - Lore Lindu National Park, Central Sulawesi, Indonesia is one of the hotspots of bio-diversity East of the Wallace line. Within the framework of STORMA (Stability of Rainforest Margins) we analyse structural tree diversity in four different land use systems, i.e. Natural Forest, Forest Garden, Fallow, and Cacao Plantations
Preliminary results reveal 100–200 tree species (> 10 cm dbh) per hectare in natural forest at 750–1200 m elevation, c. 90 species per hectare in forest gardens at 750 m, and 3–5 species in Cacao plantations. Species richness in submontane natural forest is higher than in Kalimantan (Keßler, in prep.). Forest gardens are impoverished in comparison to natural forest due to removal of small and medium-sized trees by local farmers. Species richness in fallows is still unknown (Keßler, in prep.). The arboreal vegetation of up to 5 years old fallows is characterized by the dominance of fast growing pioneers like Homalanthus populneus, Mallotus barbatus, Macaranga hispida, and Acalypha cf. caturus (all Euphorbiaceae), Trema orientalis (Ulmaceae), and Oreocnide rubescens (Urtiaceae).
Plant family richness is high in natural forest and forest gardens, but low in fallows and Cacao plantations. Considerable variation is observed in the dominant tree families of the land use systems, even among plots within single systems. The variation may be due to the high habitat and landscape diversity within the research area.


Using molecular markers to study the historical biogeography of the ‘Lusitanian’ Ericaceae in the Irish flora

Naomi Kingston1 & Steve Waldren2

1Department of Botany, Trinity College, Dublin 2, Ireland
2Trinity College Botanic Gardens, Palmerston Park, Dartry, Dublin 6, Ireland

Poster - The ‘Lusitanian’ (or Hiberno-Cantabrian) element of the Irish flora consists of a suite of species found mainly in the west of Ireland and the western Iberian peninsula, which include four species from the Ericaceae; Arbutus unedo, Daboecia cantabrica, Erica erigena, Erica mackaiana. Questions have been raised about whether this group repeatedly recolonised Ireland from southern European refugia following glacial episodes, or whether they survived full glacial cycles in more proximal refugia. This group of species is therefore of considerable European conservation importance, and its study will also be relevant to past and present climate change scenarios. Both AFLP and chloroplast microsatellite markers will be used to determine the relationships within and between the Irish populations, and their relationships to the Spanish populations. This will facilitate the estimation of a timeframe for divergence of Irish and Continental populations, and thus establish if Irish populations are ancient Pleistocene or recent Holocene colonisers.


Phylogeny of the genus Saussurea (Asteraceae) in East Asia

Yoko Kita1, Fujikawa Kazumi2 & Motomi Ito3

1Department of Biological Sciences, University of Tokyo, 7-3-1 Hongo, Tokyo 113-0033, Japan
2University Museum, University of Tokyo, 7-3-1 Hongo, Tokyo 113-0033, Japan
3Department of Systems Sciences, University of Tokyo, Komaba, Tokyo 153-8902, Japan

Poster — The genus Saussurea includes 300–400 species (Lipschitz, 1979; Bremer, 1994). To examine the geographical diversity of Japanese Saussurea, we analyzed species of Saussurea subgenus Saussurea from Taiwan, Korea, China, Nepal, and Russia. There are 23 species in Japan. Saussurea nipponica that is found throughout Japan has five identified subspecies (Im, 1991). Sequences of the nuclear ribosomal ITS region and the chloroplast matK gene were used for phylogenetic analysis. In the ITS tree, all the Saussurea except two species, S. deltoidea and S. auriculata, formed a strongly supported monophyletic group. All the species examined in the subgenus Theodorea formed a monophyletic group. This clade was the sister group to a clade containing subgenus Saussurea section Laguranthera. S. glacialis and S. gnaphalodes from subgenus Eriocoryne were the sister of S. involucrata from subgenus Amphilaena and the remaining 29 taxa examined in the subgenus Saussurea. 19 taxa of East Asian Saussurea formed a clade containing three groups (Taiwanese alpine clade, Honshu Island clade, and Shikoku and Kyushu Islands clade), one Korean species, and three from NE China. The subspecies of S. nipponica are very diverse morphologically. The ITS tree revealed that this species is a polyphyletic group; subspecies from Honshu Island were more closely related to Taiwan alpine species than to subspecies from Shikoku and Kyushu Islands. The matK sequence provided little resolution for the relationships of the Saussurea species and the topologies of the matK and ITS trees disagree. A cloning and sequencing approach for the ITS region was adopted for eight taxa, in the hope that this method would provide novel insights into the disagreement between the ITS and matK trees.


Morphological and karyological diversity of Arabidopsis (Brassicaceae) in the Carpathians and Eastern Alps

Martin Kolník1 & Karol Marhold1,2

1Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, SK-842 23 Bratislava, Slovak Republic
2Department of Botany, Charles University, Benátská 2, CZ-128 01 Praha 2, Czech Republic

Poster — The aim of our recently started project is to perform taxonomic revision of the species traditionally treated within the genus Cardaminopsis (C.A. Mey.) Hayek (Brassicaceae) in the Carpathians, and to evaluate their relationships to the populations from the Eastern Alps. Depending on the taxonomic concept, the genus Cardaminopsis comprises 12 species (Markgraf, 1960), or 8 species and several subspecies (Jalas & Suominen, 1994). However, neither morphological nor molecular data have provided support for the recognition of this genus, and recently, the taxa of the genus Cardaminopsis were included in the genus Arabidopsis Heynh. (O’Kane & Al-Shehbaz, 1997; Koch, Bishop & Mitchell-Olds, 1999).
In the course of the revision we intend to study morphological and karyological variation of taxa previously treated within the genus Cardaminopsis, and to explore their evolutionary relationships using methods of multivariate morphometrics, karyology and molecular systematics. The main focus will be on taxa occurring in the Carpathians and the Eastern Alps, which seem to represent one of the main diversity centers. The revision should include preparation of a comprehensive taxonomic treatment in the studied area, typification of relevant names, and solving various nomenclatural problems. Chorological study should be carried out as well, providing distribution areas and data on endemism.
The studied taxa of the genus Arabidopsis occur mostly in Europe, but also in North America [A. lyrata (L.) O’Kane & Al-Shehbaz subsp. lyrata, A. lyrata subsp. kamchatica (DC.) O’Kane & Al-Shehbaz], and in eastern Asia [A. halleri subsp. gemmifera (Matsum.) O’Kane & Al-Shehbaz]. The following taxa have been until now recorded from the Carpathian mountain range (Slovakia - SK, Poland - PL, Ukraine - UA, Romania - RM): A. arenosa (L.) Lawalrée - UA, RM (2n=32), A. borbasii (Zapal.) comb. unpubl. - SK, PL, UA (2n=16, 32), A. halleri subsp. halleri (L.) O’Kane & Al-Shehbaz - SK, UA, RM (2n=16), A. halleri subsp. tatrica (Mesícek) comb. unpubl. - SK, PL, UA (2n=16), A. halleri subsp. ovirensis (Wulfen) O’Kane & Al-Shehbaz - UA, RM (2n=16), A. petrogena (A. Kern.) comb. unpubl. - SK, UA, RM (2n=16, 32), A. neglecta (Schult.) O’Kane & Al-Shehbaz - SK, PL (2n=16, 32).
In addition, there are several unpublished names of taxa proposed by Mesícek (unpubl.) which will be subject of further study: Cardaminopsis carpatica - SK, PL, UA, RM (2n=16), C. nitida - SK, PL, UA, RM (2n=16), C. petrogena subsp. exoleta - SK (2n=32), C. petrogena var. kerneri - SK (2n=16), and C. neglecta subsp. robusta - SK, RM (2n=32).


Towards a monograph of the genus Cardamine (Brassicaceae)

Jaromír Kucera1, Judita Lihová1, Karol Marhold1,2 and Marián Perny1

1Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, SK-842 23 Bratislava, Slovak Republic
2Department of Botany, Charles University, Benátská 2, CZ-128 01 Praha 2, Czech Republic

Poster — The genus Cardamine includes worldwide more than 200 species and is distributed in all continents except for Antarctica. A large karyological and morphological variability is typical for numerous species groups of this genus. Some of them have already been thoroughly studied, other still wait for the taxonomical revision.
Already in 1993, during the International Botanical Congress in Tokyo, the organisation of the Species Plantarum Project was agreed and formalised. The project aims to provide in concise format, and with standardised data fields, basic taxonomic information on the vascular plants of the world, including accepted names and synonyms with bibliographic data, nomenclatural types of names, keys and descriptions, geographical distributions, and ecological information, published in both hard copy and electronic form. In September 2000 at the meeting in Pr_honice, Czech Republic, the Steering Committee of the project approved preparation of the account of the genus Cardamine and several other related genera for one of the forthcoming volumes of the Species Plantarum – Flora of the World.
Monographic treatment of the genus will be based on the synthesis of the results of our workgroup and another authors as well as on the detailed study of some selected groups of species. Wide international cooperation is expected.
In the European part of area of the genus attention has been paid until now mostly to the species groups of C. pratensis and C. amara, while at present the group of C. raphanifolia is under intensive study. Taxonomic revision of the group of C. maritima is under preparation (Marhold et al.). Evolutionary relationships within the genus were studied by molecular methods (Hurka et al.). Outside of Europe, the groups of C. gunii – C. lilacina and C. paucijuga from Australia were studied (Thompson, Ladiges), detailed accounts of the genus are available for the tropical eastern Africa and Malaysia (Jonsell), a short survey of the genus was published from Central and South America (Sjöstedt), and recently the genus was thoroughly studied for the Flora of China (Al-Shehbaz). Relationships between European and East Asian representatives of the genus are being studied now (Marhold, Lihová, Kato, Kudoh).
The first steps towards the monographic treatment of the genus is a preparation of the database of chromosome number reports (which will be subsequently revised using available voucher specimens) and a preliminary checklist of the genus, which are being completed now.


Low levels of sequence variation accompany speciation in Kunzea (Myrtaceae)

Peter de Lange1,2, Brian Murray1, Tristan Armstrong3, Helmut Toelken4

1 School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, New Zealand
2Science and Research Unit, Department of Conservation, Private Bag 68908, Auckland, New Zealand
3Landcare Research, Private Bag 92170, Auckland, New Zealand
4State Herbarium of South Australia, Botanic Gardens of Adelaide, Adelaide, South Australia 5000

Talk - There has been an increased reliance on the use of phylogenetic techniques using DNA markers to aid with the resolution of problematic New Zealand genera. However, when compared with other more traditional taxonomic techniques, there is often insufficient variation to resolve species complexes.
This has proved to be the case with the Australasian genus Kunzea (Myrtaceae), a group of approximately 65 species distributed throughout Eastern and Western Australia, with two species, the indigenous K. ericoides and endemic K. sinclairii, present in New Zealand.
Field observations in Australia and New Zealand suggests that Kunzea ericoides sensu stricto is endemic to New Zealand, but that it is part of a complex of at least seven morphologically distinct lineages in Australia and eleven in New Zealand. However, the differences between many of these taxa are subtle and further confused by apparent hybridisation at sites of prolonged human disturbance. For these reasons, we have attempted to resolve the morphological distinctions observed with molecular data, and clarify the relationship between the New Zealand and Australian Kunzea species.
Our study builds on a previous phylogenetic analysis using the chloroplast DNA sequences regions matK and atp(-rbcL by O’Brien, Quinn and Wilson published in 2000. That study sought to test the structure proposed for the Leptospermum alliance by Briggs and Johnson in 1979. As part of their study O’Brien et al., examined three Kunzea, K. baxteri, K. capitata and Australian material of K. ericoides sensu lato, representing three of the four sections within that genus. Their study showed no molecular difference between these three morphologically very distinct species.
Therefore, we have undertaken an expanded study using the internal transcribed spacer of the 18-26S ribosomal RNA genes of representative taxa from the Australian assemblages and the New Zealand K. ericoides agg. and K. sinclairii. Our results show strong support for the recognition of the proposed sections Salisia (K. baxteri, K. pulchella) and Leptospermoides (consisting of the K. ericoides complex), as distinct from section Kunzea (K. capitata and other Eastern Australian species). It is also clear that Australian and New Zealand representatives of the K. ericoides complex, though closely related, are distinct from each other. However, the ITS sequences do not help to resolve our perceived morphological differences between proposed "species" of the K. ericoides complex. This situation is not uncommon in the New Zealand flora and adds further support to the proposal that speciation in the majority of the New Zealand flora has occurred very recently.


Polyploid evolution in Cardamine amara (Brassicaceae)

Judita Lihová1 & Karol Marhold1,2

1Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, SK-842 23 Bratislava, Slovak Republic
2Department of Botany, Charles University, Benátská 2, CZ-128 01 Praha 2, Czech Republic

Poster — In our recent taxonomic treatment of Cardamine amara, several diploid and two tetraploid subspecies have been recognized in Europe. The tetraploids are represented by C. amara subsp. austriaca occurring in the Eastern Alps and adjacent areas, and by C. amara subsp. olotensis from Catalonia, NE Spain. In the present study we used combined morphometric and molecular (RAPD, AFLP, isozymes) approach to investigate these two tetraploid taxa in more detail, and to explore polyploid evolution in C. amara.
Tetraploid populations from the Eastern Alps showed low molecular and morphological divergence from the typical subspecies, diploid C. amara subsp. amara. Only minor morphological differences were observed between them: tetraploid tends to have more stem leaves, and larger floral parts, especially pollen grains. Among eight isozyme loci investigated, C. amara subsp. amara and tetraploid subsp. austriaca exhibited differences only in allelic frequencies. In both RAPD and AFLP analyses, populations of C. amara subsp. amara and subsp. austriaca formed unresolved polytomy within the C. amara branch. The results presented here seem to favour the idea of recent autopolyploid origin of the latter subspecies, derived from C. amara subsp. amara. The tetraploid occupies a compact area strongly affected by Pleistocene glaciation, which only marginally overlaps with that of widespread C. amara subsp. amara. Therefore, we assume that its origin and spread might be dated to the last interglacial or postglacial period.
For the Catalonian tetraploid, usually classified as C. amara subsp. olotensis, a distant position from other subspecies of C. amara was revealed, but on another hand, it appeared very close to taxonomically problematic tetraploid populations from central Italy. As we revealed, central Italian and Catalonian populations form one morphologically homogeneous group, and differ from the rest of C. amara in the colour of the anthers and by a combination of quantitative morphological characters. Catalonian and Italian populations shared a high number of unique AFLP fragments, and in the neighbour-joining and PCoA they were found separated from other subspecies of C. amara. Besides, Catalonian representatives seem to be genetically depauperate. Based on these results, we treat both Catalonian and Italian populations as a single tetraploid species – C. amporitana. Recent disjunct distribution, patterns of morphological and genetic variation suggest that C. amporitana might be a relict of a previously widespread ancestor with more severe bottlenecks experienced by the western lineage. Alternatively, Catalonian populations may represent direct descendents of those from central Italy, possibly by long-distance dispersal. No hypotheses have been proposed for the parentage of C. amporitana, although an ancient, preglacial polyploidization event might be suggested.
Morphological and molecular differentiation revealed here for the two studied tetraploids, and assumed differences in the time and mode of origin, are reflected in the taxonomic treatment. Although we consider both as belonging to the C. amara group, the tetraploid from the Alps is treated at the subspecific level as C. amara subsp. austriaca, that from the western Mediterranean at the specific level as C. amporitana.


Speciation in the Cape flora: a macro-evolutionary perspective

Peter Linder & Chris Hardy

Institute for Systematic Botany, University of Zurich, Zollikerstr. 107, CH-8008 Zurich, Switzerland

Invited talk — The Cape Floristic Region, although only 90 000 km2 in area, includes 9 000 species, of which almost 70% are endemic to the region. This makes it one of the more species-rich areas in the world. Furthermore, most of these species are found in large to small, subendemic to endemic, genera, indicating that much of the speciation must have happened within the Cape Floristic Region. This therefore constitutes a very suitable area in which to study the historical and environmental factors which may be involved in this remarkable speciation, and in the continued co-existence of this large number of species. Such an approach could be described as being macro-evolutionary and macro-ecological. Previous reviews and investigates implicated several factors: geographical isolation resulting from the dissected landscape or recurrent fires; strong selection resulting from the steep rainfall and temperature gradients; adaptation to different soils resulting from different bedrock types; adaptation to different pollinators in clades with a high level of pollinator specificity; and different responses to the different strategies for surviving recurrent wild fires. Here we investigate the possible relative contribution of these factors in several clades (e.g. Disa (Orchidaceae), Thamnochortus (Restionaceae), Liparia (Fabaceae)). However, it is evident that these factors are not mutually exclusive, and that evaluating the relative significance of each is difficult, consequently we will explore various methods that can be used in the search for patterns among the factors that might be driving the speciation process.


Studies on Brazilian grasses and sedges

Hilda M. Longhi-Wagner1, Ana Cláudia Araujo2, Ana Zanin3, Thaís do Canto-Dorow4 & Tatiana Chies1

1Dept. of Botany, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves 9500/ 43433 – 91501-970, Porto Alegre, RS, Brazil
2CTTMar, Universidade Vale Itajaí, Uruguai 458, Itajaí, SC, Brazil
3Dept. of Botany, Universidade Federal de Santa Catarina, Trin dade, Florianópolis, SC, Brazil
4Dept. of Biology, Universidade Federal de Santa Maria, Campuis Universitário, km 8, Camobi, 97105-900, Santa Maria, RS, Brazil

Poster — The family Poaceae includes c. 650 genera and 10,000 species, according Watson & Dallwitz (The grass genera of the world, 1992). According to Burman (Willdenowia 15, 1985) c. 200 genera and 1,400 species occur in Brazil. Luceńo & Alves (Candollea 52/1, 1997) cited 100–120 genera and c. 5,000 species of Cyperaceae of which c. 44 genera and 500–600 species for Brazil. Most of the taxonomical and floristic studies on these two families in Brazil have been based on a classical morphological approach. In the last decade other approaches started to be used in the revisions of several genera in Brazil as well as monographic worldwide studies at generic and infrageneric levels. Besides the macromorphological approach, other evidences are being used such as leaf anatomy, micromorphology of fruit surface in SEM and DNA sequencing. Leaf anatomy and micromorphology of the fruit surface are providing more useful taxonomic characters in Poaceae than in Cyperaceae at infraspecific level and interspecific relationships. The nine species of Cyperus L. subg. Anosporum (Nees) Clarke from Rio Grande do Sul, Brazil, studied by Araujo & Longhi-Wagner (Iheringia 48, 1997) could be differentiated by leaf anatomy and fruit surface ornamentation. The proposal of a modification of the circumscription of Rhynchospora sect. Pluriflorae Kük. (Cyperaceae) was based in a cladistic analysis combining macromorphological and anatomical (leaf) data. DNA sequencing was used to define the circumscription of Rhynchospora consaguinea Kunth Complex (Araujo, PhD thesis, 2001). Although the leaf anatomy and the ornamentation of fruit surface in Brazilian species of Andropogon L. (Poaceae) were quite homogeneous, it was possible to use these characteristics to separate some macromorphologicaly very similar species (Zanin, PhD thesis, 2001). In the genus Digitaria Haller (Poaceae), leaf anatomy also gave support to define the circumscription of similar species (Canto-Dorow, PhD Thesis, 2001). The study of Panicum L. subg. Panicum (Poaceae) and the revision of Raddia A. Bertoloni (Poaceae) and related genera are being carried out using macromorphology, leaf anatomy, analysis of the upper lemma surface in SEM and DNA sequencing. A molecular approach (DNA sequencing and RAPD markers) is being used in the genus Paspalum L. (Poaceae) to analyse the circumscription of some groups and the genetic variability in these groups. The change in approach represents a substantial progress in these taxonomic studies. The improved results fully justify the efforts and investments in this area. On the other hand, floristic surveys of grasses and sedges in different areas of Brazil continue to be done, and the traditional methods are still extremely important for the much needed general floristic work in countries like Brazil.


Cowpea germplasm for disease and pest resistance

Abby Lubega, M. Biruma & Harunah Kasozi

National Teachers College Mubende, Uganda

Diseases and insect pests are the major production constraints to cowpea production in Uganda. Therefore it is often necessary to control pests and disease infestations on cowpea in order to avert economic losses. Use of resistant cowpea cultivars is the most appropriate control strategy for the resource-poor farmers. In Uganda, however, cowpea varieties resistant to insect pests and diseases are largely unknown. This study therefore was conducted to evaluate and screen both local and elite materials for disease and pest resistance. The experiments were carried out at Makerere University Agricultural Research Institute Kabanyolo (MUARIK) for two growing seasons (i.e., during the short rains of 2000 and long rains of 2001). A total of 200 and 177 entries were evaluated in 2000 and 2001, respectively. For each variety, 15 plants were planted in a single row using a seed rate of two plants per hill at a spacing of 20 cm between plants and 90 cm between rows. Two replicates were used for each variety and the experiment was laid out as a randomised complete block design. Disease and pest infestation were monitored and data taken. In addition, at harvest maturity yield data per variety row was taken. Preliminary results indicate that a number of varieties exhibit multiple and specific resistance. These lines are recommended for advanced testing trials.


Taxonomy and evolution of polyploid complexes in Cardamine (Brassicaceae) in Europe

Karol Marhold1,2, Judita Lihová1 & Marián Perny1

1Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, SK-842 23 Bratislava, Slovak Republic
2Department of Botany, Charles University, Benátská 2, CZ-128 01 Praha 2, Czech Republic

Talk — The genus Cardamine in its European area includes several polyploid complexes. Among them, three traditionally recognized groups of taxa, namely C. amara, C. pratensis and C. raphanifolia, are most variable. They include examples of euploids, aneuploids as well as dysploids, and the ploidy level extends up to the dodecaploid one. Such complicated karyological variation is also partly reflected in morphological variation, and this brings inevitable problems and open questions of its taxonomic classification and related evolutionary interpretations. Recent karyological, morphological and molecular systematic studies, using isozyme, DNA sequence, RAPD and AFLP data, brought some light into these problems.
The Cardamine amara group comprises several diploid and tetraploid taxa classified at the level of species and subspecies. As currently understood, apart from the most widespread C. amara subsp. amara, it includes several diploid (C. amara subsp. opicii, subsp. pyrenaea, subsp. balcanica) and tetraploid (C. amara subsp. austriaca, C. amporitana, C. barbareoides) taxa confined to the rather restricted areas. Diploid C. wiedemanniana from the Caucasus and Turkey completes its variation. The group is well supported by the morphological and molecular evidence.
The Cardamine pratensis group is probably the most variable one in the genus both in respect of karyology and morphology. There are several well defined diploid species, mostly concentrated to the (Sub-) Mediterranean area, as C. crassifolia, C. rivularis, C. penzesii, C. castellana (unpubl.), and C. apennina (unpubl.), which stand, according to the molecular evidence, at the base of the evolution of the group. On the other hand, C. pratensis in its strictest sense includes diploids, tetraploids, hexaploids, and heptaploids, as well as dysploids, and any attempts to clarify its evolution using either morpholgical, karyological, or molecular evidence have been as yet unsuccessful. Recent detailed studies in Central Europe and in the Iberian Peninsula confirm this cumbersome picture. Moreover, recent ITS sequence and AFLP data of diploids from both the C. pratensis and C. raphanifolia groups show that most probably neither of them as currently understood, is monophyletic, and that involvement of taxa of the former in the evolution of the latter, and vice versa, should be considered.
Taxa traditionally classified as subspecies of C. raphanifolia or as subsect. Tenerae of sect. Cardamine form a rather heterogeneous assembly which lacks support on the trees built on molecular data. Apart from the Central Italian populations, currently classified as C. amporitana, and C. barbareoides which are closely related to C. amara, taxa of this group form in Europe two vaguely (if at all) related groupings. The first of them includes C. raphanifolia and C. gallaecica from the Iberian Penisula, the second one C. acris from Balkans and two, as yet unnamed taxa from Calabria (southern Italy) and southern Greece. Populations from the Caucasus treated as C. tenera, C. uliginosa and C. seidlitziana form a separate grouping.


Phylogeographical studies in monsoonal woodland refugia of the coastal mountains in the Southern Arabian Peninsula

Jörg Meister1, Norbert Kilian1, Mohamed Ali Hubaishan2 & Christoph Oberprieler1

1ZE Botanic Garden and Botanical Museum Berlin-Dahlem, Königin-Luise-Str. 6-8, D-14191 Berlin, Germany
2Ministry of Agriculture and Irrigation, P.O.Box 8073, Mukalla, Republic of Yemen

Poster — Since the Arabian Peninsula was separated from the African continent not earlier than in the Oligocene, E Africa and the Arabian Peninsula had a common tropical flora and vegetation. At the same time, migration and exchange between the xerotropical floras of Asia and Africa were possible across the Arabian Peninsula. Due to the aridisation of the entire region in the late Tertiary, the palaeo-African flora and vegetation was then forced into the south of the Arabian Peninsula, isolated from Africa, with increasing aridity finally fragmentised and delimited to refuge areas. These fragmented refuge areas of the coastal mountains in the Southern Arabian Peninsula with their endemic flora and unique vegetation are in the main focus of our investigations which are carried out as partial projects (BIOTA East Africa E13-E16) in the BIOLOG Programme on Biodiversity and Global Change funded by German Federal Ministry of Education and Research (www.biota-africa.de).
Partial project Biota East Africa E15 undertakes population genetic analyses using molecular markers which are aimed at a reconstruction of the chronological fragmentation of the relict habitats under study. Its intention is to elaborate a hypothesis for the temporal and spatial development of these habitats and will contribute to a discussion of aspects of taxonomic differentiation, floristic evolution (together with subproject E13), functional morphological adaptations (together with subproject E14), and will enable the comparison of phylogeographical patterns in plants and animals of Southern Arabia (together with subproject E16). Population genetic studies of the partial project E15 aim at an assessment of effects of areal fragmentation on the genetic diversity of plants in semi-arid habitats. While for the phylogeographical part of the project the assessment of chloroplast haplotype variation as revealed by PCR-RFLP analyses is carried out, the genetic analyses of fragmented populations will be based on the AFLP fingerprint technique.
Plant species or species groups under study are:  Cadia purpurea (Leguminosae), uclea schimperi (Ebenaceae), Gossypium stocksii / G. incanum / G. aresianum (Malvaceae), Justicia areysiana (Acanthaceae), Launaea crassifolia (Compositae), Maytenus senegalensis / M. dhofarensis (Celastraceae).
In our present contribution, first results from the phylogeographical part of the ongoing project are presented. Plants from 27 populations (3-20 individuals per population) of the Maytenus senegalensis / M. dhofarensis group – both from the southern Yemeni and western Omani refugia and from western parts of Yemen – were included in the cpDNA PCR-RFLP analysis. Sixteen primer pairs were tested in combination with five restriction enzymes. Four combinations (CS-TaqI, HK-AluI, K1K2-TaqI and LF-HinfI) revealed polymorphisms and allowed for the distinction of seven chloroplast haplotypes. While the populations from the western part of Yemen are characterised by identical haplotypes though being geographically separated by considerable distances, the four refugia along the southern Arabian coast mostly show unique haplotypes (the only exception being the joint occurrence of a haplotype in the Ras Fartak and two of the four Kor Seiban populations) indicating their continuous isolation. A less pronounced, but deviating pattern of isolation emerges in Justicia areysiana, a plant species endemic to the coastal mountains in the Southern Arabian Peninsula, where the Kor Seiban population is linked up with the more western Jabal Urays refugium and not with the eastern Yemeni populations.


Towards a phylogeny of Eugenia (Myrtaceae): cpDNA variation of species from southern Africa and Mauritius

Marlien van der Merwe1, A-M Oberholster2 & AE van Wyk1

1Department of Botany, University of Pretoria, Pretoria, 0002 South Africa
2Department of Genetics, University of Pretoria, Pretoria, 0002 South Africa

Poster — Eugenia is a large genus in Myrtaceae (Myrtoideae) with more than 900 species occurring in the Americas, the Mascarene Islands, Africa, Asia and Australia, the bulk of the species being centred in South America. In southern Africa 14 species are recognised. Members of Eugenia are characterised by very little macro-morphological variation and the circumscription of infrageneric taxa has long been problematic. Among southern African members two groups (X and Y) were proposed based on anatomical and micro-morphological characters. The relationship of southern African Eugenia with its counterparts elsewhere in the world is not clear. In this study chloroplast DNA regions were used to establish if molecular data supports the sub-grouping of the southern African members. Furthermore the relationship of southern African taxa with those from Mauritius (including Monimiastrum) was investigated. A few species representative of the distribution range of the genus elsewhere in the world were included in the analysis. Four chloroplast regions, trnL-F intron, rpl22 intron, psbA-trnK region and the rpl16 intron, were sequenced for a few of the species and alignments compared. Over all very little sequence variation was found. The rpl16 intron was the most informative and sequences of this region were obtained for all taxa. Among the southern African members of Eugenia two clear groups could be identified. These groups are congruent to what has been found with the anatomical and morphological data. The rpl16 intron sequence data thus supports the division of southern African Eugenia into groups X and Y. Eugenia and Monimiastrum from Mauritius seem to be most closely related to the larger of these groups (Y). Although the relationship is not clear, group X would appear to be more closely related to Eugenia from the New World. The rpl16 intron did not resolve any relationships among closely related species possibly due to slow sequence divergence. The region nevertheless holds considerable promise to assist in elucidating the infrageneric phylogeny/classification of the genus.


Species barriers maintained by strong extrinsic selection at the second hybrid generation

Richard Milne & Richard Abbott

Division of Environmental and Evolutionary Biology, School of Biology, University of St Andrews, St Andrews, Fife, KY16 9 TH, Scotland, UK

Talk — Isolating barriers between sympatric interfertile species are maintained by processes that occur within their hybrid zones. Although the effects of intrinsic selection on hybrid fitness are well known, less is understood about extrinsic fitness variation. At Tiryal Dag, NE Turkey Rhododendron x sochadzeae (R. ponticum x caucasicum) forms large populations in which neither segregation nor backcrossing occur, in habitats intermediate between those of its parents. Using single-copy species-specific RAPD and ISSR markers, it was determined that all R. x sochadzeae plants are F1s, and that there are many separate genets present. Through hand pollination experiments, it was determined that R. x sochadzeae plants can produce viable seed of F2s or backcrosses in either direction. Therefore, all non-F1 hybrid derivatives appear to be eliminated at Tiryal Dag due to post-germination selection.. However, adult backcrosses can and do recruit in large numbers in different habitat conditions at another site. From this, the selection that favours F1s over BCs at Tiryal Dag must be habitat-mediated. We have concluded that strong habitat-mediated selection is most likely maintaining species barriers at Tiryal Dag by eliminating hybrid generations subsequent to F1. Similar forces might occur in other hybrid zones, but be countered by additional effects that increase fitness in post-F1s, or restrict formation and/or fitness of F1s. Possible mechanisms that might underlie habitat-mediated superiority of F1s will be discussed.


Identifying clades in Asian soursops – molecular phylogeny of Miliusa and Polyalthia (Annonaceae)

Johan B. Mols, Paul J.A. Keßler & Barbara Gravendeel

Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Talk — The Annonaceae are a pantropical family of trees, shrubs and lianas consisting of c. 130 genera and 2300 species. Although the family is clearly defined, generic and tribal delimitation of especially the Asian Annonaceae is controversial due to many overlapping morphological characters. The main goal of this study was to reconstruct a molecular phylogeny of the genus Miliusa, which is traditionally assigned to the tribe Miliuseae together with five other genera, and of the genus Polyalthia which is generally regarded to be a polyphyletic genus.
Parsimony analysis of cpDNA rbcL, trnL intron and trnL-trnF intergenic spacer sequence data, collected from more than 100 taxa occurring in Asia, Africa and America, was performed. Miliusa proved to be monophyletic, just as three other genera in the Miliuseae (Alphonsea, Orophea and Platymitra). Separate clades in Miliusa will be correlated with morphological and geographical patterns. Polyalthia proved to be highly polyphyletic, with species ending up in different clades. Options for a phylogenetically based subdivision of Polyalthia into several smaller genera will be discussed.


Phylogeny of southeastern Asian and Pacific Aglaia (Meliaceae) inferred from nuclear ITS and plastid rps16 sequences

Alexandra N. Müllner1, Rosabelle Samuel1, Mark W. Chase2 & Harald Greger3

1Institute of Botany and Botanical Garden, Dept. of Higher Plant Systematics and Evolution, University of Vienna, Rennweg 14; A-1030 Vienna, Austria
2Jodrell Laboratory, Molecular Systematics Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK
3Institute of Botany and Botanical Garden, Dept. of Comparative and Ecological Phytochemistry, University of Vienna, Rennweg 14; A-1030 Vienna, Austria

Talk — Aglaia, the largest genus of the woody family Meliaceae (Sapindales) and comprising more than 100 species, occurs in the tropics of southeastern Asia, the Pacific islands and northern Australia. The diversity within the genus, constituting one of the most important sources of biologically active compounds within the family, has become severely threatened due to overexploitation and habitat loss. Boundaries between the two currently recognized sections (Aglaia and Amoora) and between most of the species have remained unclear until now. This study was carried out to infer phylogenetic relationships among Aglaia species using sequence data from the ITS region of the nuclear ribosomal DNA and the rps16 intron of plastid DNA. Species of all two sections of Aglaia plus closely related Meliaceae genera belonging to the same tribe within subfamily Melioideae, as well as members of other tribes within the family were included. Single ITS and combined phylogenetic analyses of ITS and rps16 support the recognition of three groups within Aglaia. One group comprises species previously assigned to section Amoora based on dehiscence of their fruits. Two other species, A. teysmanniana and A. lawii, with flower characters intermediate between the two sections, but assigned to section Amoora based on dehiscence of their fruits, form another group together with some other representatives of section Aglaia. The third, largest and most diverse group comprises species formerly assigned to section Aglaia based on their indehiscent fruits. Concerning boundaries between and within species, DNA data indicate it may prove necessary to divide some of the morphologically variable and complex species into two or more (sub)species (e.g. A. elliptica, A. tomentosa).


Inheritance and genetic variation of enzymatic markers in Cerastium alpinum

Anna-Britt Nyberg Berglund1 & Anna Westerbergh2

1Department of Natural and Environmental Sciences, Mid Sweden University, S-851 70 Sundsvall, Sweden
2Department of Plant Biology, Swedish Agricultural University, S-750 07 Uppsala, Sweden

Talk — The polyploid plant Cerastium alpinum (Caryophyllaceae) is common in the Scandinavian mountain range where it grows on alpine heaths and serpentine soils rich in heavy metals. It is also found in the subalpine and boreal region where it grows on serpentine, dolomite and steep slopes. Analysis of enzymatic variation among populations on various soil types has shown two major genetic groups, which suggests that C. alpinum colonized Scandinavia both from the east and the west after the last glaciation. Large genetic differences among populations within each genetic lineage were also found. This suggests that the populations are effectively isolated from each other. Restricted gene flow could be explained by a high degree of selfing or inbreeding as wel as limited pollinator flights between populations. To distinguish between the alternatives we will analyze the genetic structure within populations in the eastern and western groups. But before that we need to elucidate the mode of inheritance of enzyme markers that will be used. When a suitable model for the gamete formation is found, it is possible to calculate expected frequencies of different zygotic phenotypes under random union of gametes and to compare this with the observed number of different enzyme phenotypes. At the Pgi-2 and Tpi-3 loci no segregation was observed for crosses between heterozygous individuals. Such fixed heterozygosity is a common feature in allopolyploids. However, two different fixed patterns in Pgi-2 was found, which suggest that at least two different polyploidization events have occurred during the evolution of this species. The progeny from selfed plants heterozygous for two alleles at the Mr-1 locus segregated in a 2:2:1 ratio. The large proportion of homozygotes suggests a disomic rather than polysomic inheritance. The surplus of one of the homozygotes may indicate some detrimental effects of selfing because a 1:2:1 ratio was found in crosses between individuals. C. alpinum seems to be diploidized at the Mr-1 locus. Assuming a diploid model for inheritance in this marker, deficiencies of heterozygotes was found in about half of the populations in both the eastern and the western group. This may indicate that a high degree of selfing can restrict the gene flow among populations of C. alpinum.


Separating population structure from population history in the fucoid seaweed Ascophyllum nodosum

Jeanine L. Olsen

Department of Marine Biology, Centre for Ecological and Evolutionary Studies, University of Groningen, 9750 AA Haren, The Netherlands

Invited talk — Ascophyllum nodosum is a dominant seaweed along many rocky intertidal shores throughout the North Atlantic. Next to the kelps, fucalean taxa such as Ascophyllum are the largest macrophytes and provide important habitat for invertebrates. Understanding the underlying genetic structure of natural populations over a range of spatial scales – meters to thousands of kilometers – can reveal how the causes of structure may change with scales. Here I analyze six polymorphic microsatellite loci in >1000 individuals. Strong genetic structure at small spatial scale (<10 m and up to 1 km) was found and is consistent with demographic models based on long-lived individuals, low recruitment and many sib matings. At intermediate scales (1–100 km), isolation by distance was found to follow a stepping stone model. At large spatial scales only weak population differentiation was found and tree-topology is characterized by shallow divergences. Given that the entire North Atlantic was recolonized only within the past 10,000 years, such a pattern is consistent with a rapid sweep from southern refugia as A. nodosum does not occur in the Pacific. The Brittany peninsula is characterized by high allelic diversity and appears to be a biodiversity hotspot for many cold-temperate taxa.


Seed protein analysis as a tool for taxonomy of Alcea (Malvaceae) in Iran

Maneezhe Pakravan

Biology department, Alzahra University, Vanak sq.,Tehran, Iran

Poster — The genus Alcea L. is represented by 34 species in Iran. Seed protein extracted from the 27 species and 4 variety and compared by SDS-PAGE electrophoresis method. For analysing the species on the baseis of bands obtained from the electrophoresis of their protein extract the coefficient of simple matching and average linkage clustering techniques (UPGMA) were utilized. The results supporting the present delimitation of the species. The data showed that species can be separated by their protein patterns and they also support the relationships of some morphologically close species.


Elucidating species-level phylogenetic relationships in Senecio sect. Jacobaea (Asteraceae) with AFLP and DNA sequence data

Pieter Pelser, Barbara Gravendeel & Ruud van der Meijden

Nationaal Herbarium Nederland, Leiden University branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Talk — The species composition and molecular phylogeny of Senecio sect. Jacobaea (Asteraceae; Senecioneae) were studied to identify the closest relatives of Senecio jacobaea. This information is of great importance to studies using S. jacobaea as a model system to investigate the evolution of chemical defense strategies. Maximum parsimony and Bayesian inference analyses of DNA sequence data of the plastid genome (the trnT-L igs, the trnL intron, two parts of the trnK intron, flanking both sides of the matK gene, and the psbA-trnH igs) and nuclear genome (ITS1, 5.8S, and ITS2) identified 24 species as members of section Jacobaea. Phylogenetic analyses also indicated that DNA sequence markers can be used to study the phylogeny of sect. Jacobaea, although relationships between closely related species were sometimes poorly resolved due to low levels of sequence variation between the accessions and incongruence between the plastid and nuclear data set. Hybridization might have been an important factor in the evolutionary history of sect. Jacobaea. Contrary to the DNA sequences, phenetic and maximum parsimony analyses of AFLP data resolved evolutionary relationships between closely related taxa in sect. Jacobaea, both at the inter- and intraspecific level.


Taxonomy and evolution of Cardamine raphanifolia

Marián Perny1 & Karol Marhold1,2

1Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, SK-842 23 Bratislava, Slovak Republic
2Department of Botany, Charles University, Benátská 2, CZ-128 01 Praha 2, Czech Republic

Poster — Five infraspecific taxa have generally been treated under Cardamine raphanifolia Pourr. in Europe (C. raphanifolia subsp. raphanifolia, subsp. gallaecica, ‘proles’ calabrica, subsp. acris, subsp. barbareoides); two of them were by some authors left in species rank as originally published (C. acris, C. barbareoides). In addition, three taxa with mainly Caucasian and Near East distribution (C. tenera, C. uliginosa, C. seilditziana) were usually considered as closely related to European populations. Taxonomic and evolutionary relationships in a ‘Cardamine raphanifolia group’ thus defined have not been studied in detail until now, treatment of the taxa in floras is often confusing, and identity of many populations is not clear. We performed karyological, morphological and molecular studies of populations from European part of distribution area of this group. The aims were to produce a taxonomic revision of the group in Europe as well as to give insights into its evolution. Considerable karyological variability was observed in Iberian populations – subsp. gallaecica: 2n=32, 48; subsp. raphanifolia: 2n=48, 64 (x=8). C. raphanifolia ‘proles’ calabrica from S Italy is hexaploid with 2n=48; subsp. barbareoides from NW Greece is tetraploid with 2n=32, and remaining Balkan populations of subsp. acris are diploid: 2n=16. Multivariate morphometric analyses of thirty seven quantitative characters included exploratory data analysis, principal component analysis, cluster analyses and discriminant analyses. Analyses revealed (1) intermediate position of populations of subsp. gallaecica between subsp. raphanifolia and C. amara subsp. pyrenaea, with good separation of these taxa by several morphological characters but low morphological difference among different cytotypes within the first two taxa; (2) separation of hexaploid Calabrian populations from diploid Balkan populations as well as from Iberian populations, and (3) complicated variability of both quantitative and qualitative morphological characters among Balkan populations. Results of AFLP study of 160 accessions including Asian taxa related to C. raphanifolia and selected taxa from the C. amara and the C. pratensis groups confirmed clustering of populations within particular taxa which correspond to that from morphometric analyses, but on a higher level (1) placed tetraploid C. barbareoides accesions within C. amara s.l. cluster, (2) placed hexaploid Calabrian populations within C. acris s.l. cluster, (3) revealed genetic relatedness of Iberian populations of subsp. raphanifolia and subsp. gallaecica; and (4) gave support for monophyly of Caucasian acccesions. Taxonomic conclusions from the three sources of data: subspecies of C. raphanifolia should be treated on the level of species. Evolutionary implications: the patterns of morphological characters as well as molecular and karyological evidence indicate reticulate evolution by polyploidy and hybridization.


Evolution of endemic vascular plants of Ullung Island, Korea

M. Pfosser1, T. Stuessy1, B.-Y. Sun2 , H. Weiss1, Y.-P. Guo2, T. Fer2 & C.-G. Jang2

1Department of Higher Plant Systematics and Evolution, Institute of Botany, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
2Faculty of Biological Sciences, Chonbuk National University, Chonju, Korea.

Talk — Ullung Island is of volcanic origin and lies 150 km E of peninsular Korea in the Eastern Sea. It has a surface area of 72 sq. km. and a high central point of 985 m. On this isolated oceanic island occur 700 vascular plant species, of which 28 are endemic. All but six of these species are their only generic representatives. For the other three pairs of species (in Acer, Carex and Viola) they are not closely related to each other. The pattern of phylogeny in Ullung Island, therefore, appears to be by anagenesis, i.e. immigrants having arrived and diverged without further cladogenesis. The young age of the island (1.8 my) and its relatively uniform ecology may explain this lack of additional speciation, so characteristic of other oceanic islands. Comparison of continental progenitor and endemic island derivative, therefore, can provide insights on initial stages of island speciation, especially involving cytogenetic and genetic changes. We have analyzed progenitor and derivatives in Acer (Sapindaceae), Dystaenia (Apiaceae) and Hepatica (Ranunculaceae) using a combination of data from FISH, GISH, DNA sequences (ITS, trnL-F, chloroplast microsatellites, and AFLPs. Progenitors for endemic Acer okamotoanum and A. takesimense came from peninsular Korea (from A. mono and A. pseudosieboldianum, respectively) as did that for Hepatica maxima (from H. asiatica), but Dystaenia takesimense has originated from D. ibukiensis from Japan. Based on samples of peninsular populations, AFLP data suggest specific geographic regions for origin of most of the island endemics. Only in Acer okamotoanum populations do DNA data indicate multiple origins and/or multiple genetic exchange with progenitor populations. No cytogenetic changes can be detected in the origin of the endemic species of Acer or Hepatica, but loss of satellite and/or B-chromosomes and NOR regions has occurred during speciation of Dystaenia takesimana.


Radiations in the Oncidioid orchids

Martyn P. Powell1,4, Franco Pupulin3, Jorge Warner3, Lars Chittka2, Mark W. Chase1 & Vincent Savolainen1

1Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK
2School of Biological Sciences, Queen Mary College, University of London, E1 4NS, UK
3Lankester Botanical Garden, University of Costa Rica, Cartago, Costa Rica
4Dept of Botany, School of Plant Sciences, University of Reading, RG6 6AS, UK

Talk — Oncidioid orchids (subtribe Oncidiinae) demonstrate an extraordinary radiation, comprising over 1700 species in tropical America. We evaluate the role mimicry has played in this radiation in the neotropical forests of Costa Rica. In order to allow for a more specific study of visual mimicry, we analysed colour distributions and floral reflectance of sympatric plants from twenty sites, where an oncidioid orchid was central to the site. As bees are the most common pollinators in these communities and almost certainly the pollinators of oncidiod orchids, we used a model of their colour vision to conduct the study and preliminary analyses of the data indicates that two basic types of orchid mimicry are in operation: (i) oncidioid orchids of the genera Oncidium and Erycina strongly reflect both yellow and ultra-violet light, a characteristic shared only with Byrsonima crassifolium (Malpighiaceae); and (ii) other oncidioid orchids tend to converge on the rest of the community without displaying any unique differences.


Molecular evolution of non-coding chloroplast DNA

Dietmar Quandt1, Michael Stech2, Kai Müller1, Sanna Huttunen3, Khidir W. Hilu4 & Thomas Borsch1

1Botanisches Institut und Botanischer Garten, Rheinische Friedrich-Wilhelms-Universität Bonn, Meckenheimer Allee 170, D-53115 Bonn, Germany
2Institut für Biologie - Systematische Botanik und Pflanzengeographie -, Freie Universität Berlin, Altensteinstraße 6, D-14195 Berlin, Germany
3Botanical Museum, University of Helsinki, P-O- Box 47, FIN-00014 Helsinki, Finland
4Department of Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

Talk — Non-coding regions are becoming increasingly popular for inferring phylogenies at different taxonomic levels. In spite of their wide application, comparatively little is known about variability, evolution, and functional constraints of these regions. In the present study we investigate molecular evolutionary patterns in a variety of non-coding chloroplast regions, such as the atpB–rbcL intergenic spacer, the psbT-H gene cluster (coding for photosystem II proteins), and the trnT-F region. These are among the most widely used non-coding chloroplast regions in plant systematics. Various examples of molecular evolutionary patterns of these non-coding regions are presented and their possible influence on phylogeny reconstruction is discussed.
An analysis integrating information on secondary structure and sequence variability is used to define evolutionary conserved and hypervariable parts in these regions. It is shown that trnT-L-spacer, trnL-intron, and trnL-F-spacer exhibit different characteristics with regard to the occurrence of substitutions, and length mutations. These differences in evolutionary modes and tempos may be explained by different functional constraints. Furthermore, inversions and putative sigma70-type bacterial promoter motifs are discussed, with an emphasis on the psbT-H gene cluster. A consensus sequence of the putative psbN promotor for bryophytes is presented, which seems to be conserved across land plants. An analysis of the 3’ flanking inverted repeat sequences of psbN revealed a dyad symmetrical element, which is able to form a stable stem-loop structure. This hairpin structure is characterized for land plants. Furthermore, an inversion of up to 9 bases situated in the loop region of the hairpin structure was observed in different unrelated bryophyte taxa. The influence of inversion sites on phylogenetic structure is quantified and it is shown that they contribute phylogenetic noise which significantly lowers the robustness of phylogenetic hypotheses. A parallel case in the atpB–rbcL intergenic spacer is discussed as well.


Patterns of variation in Cynara: a preliminary molecular study

Lavinia Robba1, Mark A. Carine2 & Francesco M. Raimondo1

1Department of Botany, Palermo University, via Archirafi 28, I-90123 Palermo, Italy
2Department of Botany, The Natural history Museum, Cromwell Road, London SW7 5BD, UK

Poster — Cynara L. (Asteraceae, Cardueae) is native to the Mediterranean basin. It includes the globe artichoke (Cynara scolymus L.), a widely cultivated food plant, the cardoon (Cynara cardunculus L.), also cultivated for its leaves, together with 7 other wild species. All wild species are perennial and the genus is characterised by large spiny leaves and heads. In Flora Europaea (1976) the genus was divided into 3 sections based on the presence or absence of stem, the shape and structure of cauline leaves, involucre, middle and upper involucre bracts and achenes. However, in a recent revision of the genus, Cynara tournefortii Boiss. & Reuter, a species endemic to the Iberian peninsular and north Morocco very distinctive because of its total lack of stems, was treated as a separate monotypic genus Arcyna.
As part of a broader study on the systematics and genetic resources of Cynara, a molecular sequencing study utilising the ITS region or nrDNA and trnL-F region of cpDNA is being carried out. The aim of this study is to address a number of questions:
1) What is the position of Cynara in the Cardueae?
2) Is Cynara s.l. monophyletic?
3) What is the closest wild relative of the cultivated Cynara scolymus?
4) What infrageneric classification of Cynara do the molecular data support?
The preliminary results of this work are presented and discussed.


Don‘t discard microsatellite markers that don‘t produce amplification products in individual species! An example of genome analysis in amphidiploid Brassica napus L.

Barbara Rudolph1, Milena I. Uzunova2 & Wolfgang Ecke3

1University of Hamburg, Institute of General Botany and Botanical Garden, Module Systematics, Ohnhorststr. 18, 22609 Hamburg, Germany
2KWS Saat AG, Grinsehlstr. 31, D-37574 Einbeck, Germany
3University of Göttingen, Institute of Agronomy and Plant Breeding, Von-Siebold-Strasse 8, D-37075 Göttingen, Germany

Poster — The amphidiploid Brassica napus genome (n = 19) appears to have arisen polyphyletically by several interspecific hybridization events between the diploids Brassica campestris (n = 10) and Brassica oleracea (n = 9). This seems to be a natural mechanism, occurring also in other amphidiploid species of Brassica. RFLP analyses suggest that it is followed by reshuffling of the amphidiploid genome, e.g., chromosome rearrangements, gene conversions, loss of chromosome fragments and/or duplication of genome regions. Some of these genome rearrangements were easily traceable by simple sequence repeat (SSR) analyses. We constructed a set of 129 primer pairs flanking microsatellites, and 113 of them showed reproducible amplification products in 38 Brassica napus lines. Whereas microsatellite markers are usually regarded as ‘one locus markers’, our first tests for polymorphism revealed several duplication events. Out of a set of 33 SSR markers that could be integrated in an RFLP linkage map of Brassica napus, 21 were members of this group of primer pairs representing several loci.
In Brassica napus, as described in other species, several SSR markers tend to produce so called ‘nullalleles’, producing no amplification products in some individuals. Such markers often had been excluded from further analyses. In this approach 13 such microsatellite markers were mapped as dominant markers. In addition, we included the diploid species B. campestris (A genome), B. oleracea (C genome), B. nigra (B genome) as well as the amphidiploids B. carinata (AB genome) and B. juncea (BC genome) in our analyses. In 20 SSR loci of Brassica napus (AC genome) it was the lack of amplification products that allowed to trace their origin to either the A genome (10 loci) or the C genome (10 loci). Two of these loci from the A genome could be integrated into the linkage map of Brassica.


Phylogenetic relationships in Hypochaeris and related genera (Asteraceae, Cichorieae) based on nuclear ITS and plastid trnL/F and matK sequences

Rosabelle Samuel1, Tod Stuessy1, Karin Tremetsberger1, Walter Gutterman2 & Sonia Siljak-Yakovlev3

1Department of Higher Plant Systematics and Evolution, Institute of Botany, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
2Department of Chorology and Vegetation Science
3Laboratoire Ecologie, Systématique et Evolution, Universite de Paris-Sud XI, Bat. 360, F-91405 Orsay Cedex, France

Talk — Nuclear internal transcribed spacer region (ITS) and chloroplast trnL intron and trnL/trnF spacer and matK sequences were used to assess relationships among European and South American species of Hypochaeris plus some species of Leontodon and other related genera of tribe Cichorieae. ITS tree shows high resolution compared to that of the maternally inherited trnL/F and matK genes. ITS and combined tree reveal clades that agree well with sections of the genus Hyphochaeris established previously on morphological and cytological grounds except for H. robertia. The taxonomic position of H. robertia still remains questionable. Lower levels of sequence divergence among South American taxa suggest a pattern of rapid speciation, in contrast to much greater divergence among European representatives. Nuclear ITS sequences reveal that Leontodon is paraphyletic, supporting the morphological classification of Widder (1975) and Finch and Sell (1976). Leontodon, Picris and Helminthotheca are very closely related to each other as well as to Hypochaeris.


Polyploid formation and establishment in bryophytes

Sigurd M. Sĺstad

Department of Natural History, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway

Talk — Growing evidence from molecular data demonstrate neopolyploid origin in bryophytes. However, we lack empirical data on important stages of the pathways potentially important for polyploid formation in this group of plants. Hence, questions regarding commonness of various types of polyploids (allopolyploids and autopolyploids) and mode of formation (apospory versus diplospory) remain unsettled. Models developed for polyploid evolution in seed plants are not directly applicable to bryophytes because of important differences in their life cycles. Bryophytes are unique among land plants in that the gametophyte is the longer lived, autonomous and more photosynthetically active generation. The gametophyte also has a high potential for vegetative reproduction; in principal every cell may regenerate into a new individual. In this presentation I review the current knowledge of polyploid evolution in bryophytes, and assess the processes of polyploid formation and establishment in light of the bryophyte life cycle.


Evolutionary radiations in plants: case studies in South Africa and South America

V. Savolainen1, M. Perret2, A. Chautems2, P.Goldblatt3, J. Manning4, M. Powell1, M. van der Bank5, T. Barraclough6 & M.W. Chase1

1Royal Botanic Gardens, UK
2Botanical Garden of Geneva, Switzerland
3Missouri Botanical Garden, USA
4National Botanical Institute, South Africa
5Rand Afrikaans University, South Africa
6Imperial College at Silwood Park, Ascot, UK

Invited talk — Species-level phylogenetic trees allow the evaluation of various hypotheses for the origin of species diversity. Two case studies will be discussed: Neotropical Gesneriaceae and the African peacock irises Moraea. For nearly all species in the three genera of tribe Sinningieae (Gesneriaceae), Sinningia, Paliavana, and Vanhouttea (mostly in southeastern Brazil) six non-coding DNA regions and several intron in nuclear plastid-expressed glutamine synthetase gene (ncpGS) were sequenced. Separate and combined analyses of these data sets using maximum parsimony supported the monophyly of Sinningieae, but the genera Paliavana and Vanhouttea were found embedded within Sinningia; therefore a new infrageneric classification is here proposed. Mapping of pollination syndromes on the DNA-based trees supported multiple origins of hummingbird and bee syndromes and derivation of moth and bat syndromes from hummingbird flowers. Perennial tubers were derived from perennial stems in non-tuberous plants. Phylogenetic analyses of four plastid DNA regions from each of 163 species in the African genus Moraea (Iridaceae: Irideae) including accessions of all major species clusters in the genus, show Moraea to be paraphyletic when Barnardiella, Galaxia, Hexaglottis, Homeria (all southern African), and Gynandriris (Eurasian as well) were recognized as separate genera. There are several small, isolated species clusters at the basal nodes of the tree that are all restricted to the winter-rainfall zone of southern Africa (the Greater Cape floral kingdom) and a few, highly derived, large species groups that have radiated extensively within the winter-rainfall zone. Mapping of floral traits shows that an Iris-type flower is ancestral in Moraea. Floral changes are associated with shifts in pollination systems, either from passive pollen deposition on long-tongued bees foraging for nectar to active pollen collection by female bees foraging for pollen, fly, or hopliine scarab beetle pollination. Dating the nodes of the phylogenetic tree using non-parametric rate smoothing with a calibration point derived from broad dating of the angiosperms indicates that the divergence between Moraea and its sister genus Ferraria occurred about 25 mya in the early Miocene. The early radiation of Moraea took place against a background of aridification and the spread of open habitats, such as desert, shrubland, and fynbos.


Gene Genealogies and Phylogeography in Plant Populations

Barbara Schaal

Department of Biology, Washington University, St. Louis, MO 63130, USA

Invited talk — The distribution of genetic variants in plant populations is strongly affected by both current patterns of microevolutionary forces, such as gene flow or selection, and by the phylogenetic history of populations and species. Understanding the interplay of shared history and current evolutionary events is particularly confounding in plants due to the reticulating nature of gene exchange between diverging lineages. The development of rapid DNA sequencing methods has provided an important tool for analyzing the standing distribution of genetic variation within species and for determining the relative importance of adaptive evolution versus other processes. Gene sequences provide historically ordered neutral molecular variation that can be converted to gene genealogies which trace the evolutionary relationships among haplotypes (alleles). Gene genealogies can be used to understand the evolution of specific DNA sequences and relate sequence variation to plant phenotype. For example, in a study of the RPS2 gene in Arabidopsis thaliana, resistant phenotypes clustered in one portion of the gene tree. The field of phylogeography examines the distribution of allele genealogies in an explicit geographical context and, when coupled with a nested clade analysis, can provide insight into historical processes such as range expansion, gene flow, and genetic drift. We have used a phylogeographical approach to understand the relative effects of gene flow and range expansion in the evolution of native pine species in Asia. Phylogeographic studies can also offer insight into practical issues as well, such as the domestication process in crops, and the origin of invasive weeds.


Plant speciation modes in Amazonia with special reference to the Melastomataceae

Leif Schulman1,2 & Kalle Ruokolainen1

1Section for Biodiversity and Environmental Science, Department of Biology, FIN-20014 University of Turku, Finland
2Current address: Helsinki University Botanic Garden, FIN-00014 University of Helsinki, Finland

Talk — Due to overemphasis during the last three decades on the Pleistocene Refuge Hypothesis and the allopatric speciation mode in general, alternative speciation models have hardly been explored in Amazonia. In recent years the constellation has changed. The refuge hypothesis has met with strong opposition. Theoretical and empirical studies have shown that sympatric divergence is a tenable alternative to allopatric speciation. Local genetic differentiation driven by natural selection has been estimated to play a central role in plant speciation. Studies on plant speciation have proven that several evolutionary phenomena enabling sympatric speciation occur in plants. In Amazonia, analytical studies on speciation modes are nevertheless almost non-existent. It has been pointed out that allopatric models cannot easily account for all diversity and distributional patterns found in Amazonia, but these claims have been based simply on field observations. The question is difficult to tackle due to a lack of taxonomic, biogeographical, ecological, and phylogenetic information on Amazonian plants. Here I present two case studies in the Melastomataceae that focus on speciation modes. In the first, the best available taxonomic and distributional information was used to pick a sympatric pair of supposed sibling species in the genus Clidemia. The species, C. epiphytica and C. longifolia, were collected in three areas in western Amazonia. The morphology of the specimens was analysed and compared to ecological data collected on the same sites. The results showed that the taxa most probably are two separate biological species that occur in sympatry but are ecologically separated (grow in different habitats). The most parsimonious explanation for these results is that they have diverged sympatrically. In the second case, a phylogeny was constructed for the predominantly Amazonian genus Adelobotrys. Sibling taxon pairs were selected from the phylogeny for a biogeographical comparison. This revealed a mixed signal: some of the pairs were clearly allopatric, others sympatric, and some parapatric. Some of the sympatric cases were selected for an ecological comparison. In a couple of cases clear habitat partitioning was found, suggesting that these may be examples of sympatric speciation through ecological specialisation. Both studies thus point to possible cases of non-allopatric speciation, but they provide only circumstantial evidence. However, only the existence of good candidate cases renders feasible deeper studies on mechanisms that could have caused a breach in gene flow between two ancestral populations and hence enabled speciation. The next step in the search for actual cases of non-allopatric plant speciation in Amazonia could be to study the reproductive biology and genetics of some of the candidate cases revealed in the current studies.


Radiation in Nonea Medik. (Boraginaceae): preliminary evidence from morphology, karyology and DNA sequence variation

Federico Selvi1, Massimo Bigazzi1, Alessio Papini1 & Hartmut H. Hilger2

1Dipartimento di Biologia Vegetale dell’Universitŕ, Via G. La Pira 4 I-50121 Firenze, Italy
2Institut für Biologie – Systematische Botanik und Pflanzengeographie – Freie Universität Berlin, Altensteinstr. 6, D-14195 Berlin, Germany

Poster — Nonea Medik. is one of the core genera of the Boraginaceae tribe Boragineae, and consists of about 40 taxa distributed in the Tethyan region from Western Asia to Morocco and the Iberian peninsula, with a centre of diversity between the Pontic-Caucasian mountain system and the Eastern Anatolian highlands. Fewer species occur in Europe and in the Mediterranean, especially along the North African coast.
Johnston (1924) considered it as no more than a ‘xerophytic section’ of Pulmonaria, but this judgment was based on a limited knowldege of the group and on the common assumption that most Nonea species are annual and grow in dry habitats. Still today, Nonea ranges among the less known genera of tubiflorous Angiosperms of the Mediterranean and Middle-East, possibly due to the rarity of several taxa and to the difficulty in the study of herbarium material.
The poorly investigated morphological, karyological and ecological diversity within this group prompted us to undertake additional studies in the attempt to better understand the possible processes of species radiation in the Middle-East and in Mediterranean area.
This poster summarizes the results of ongoing studies on Nonea based on morphology (phenetics and cladistics), karyology and DNA sequence variation.
Phenetic analysis separates five groups of annual species on one side and two of perennial taxa on the other. Paraskevia cesatiana (( N. cesatiana), an enigmatic species from the Peloponnese with a debated generic position, is in intermediate position between Nonea and Pulmonaria. Cladistics indicate that the two NorthAfrican species of the closely allied genus Elizaldia are nested into Nonea, suggesting the paraphyly of this genus in its current circumscription.
Combined together morphological and karyological data suggest that the mesophytic and perennial species from the high mountains in Eastern Anatolia and Pontic-Caucasian area, such as N. intermedia, N. pulmonarioides, N. monticola, N anchusoides and N. macrantha, form a homogeneous basal group with plesiomorphic characters and base chromosome number x = 10. From those of these taxa with diploid complement 2n = 20 (all except N. anchusoides), two evolutionary lines seem to have originated, one through (allo)polyploidy and a second one by descending dysploidy. The former is possibly at the base of an euploid series centred in Anatolia and consisting of 2n = 40 (N. anchusoides), 2n = 60 (N. macrosperma) and maybe even 2n = 100 (some cytotypes of N. persica); floral zygomorphy (N. macrosperma, N. persica) is one of the main morphological tendencies in this line. In the latter lineage, lower base chromosome numbers are largely prevalent, i.e. x = 9 (some cytotypes of N. persica), x = 8 (i.e. N. versicolor, N. polychroma, etc.) and x = 7 (i.e. N. lutea, N. pallens, etc.). Most of these taxa are diploid, annual/biennial (excl. N. persica) and typically linked to dry habitats. This suggests that descending dysploidy may have proceeded in parallel with the tendency to the abbreviation of the life-cycle during species radiation in the xeric areas of the Near East and the Mediterranean. In this annual/biennial lineage, some dramatic changes have occurred in flower, pollen, stigma and fruit morphology. Some of these characters follow in parallel an East-to-West direction of variation that suggest colonization of North Africa and the Iberian peninsula via South Anatolia and the SouthEast Mediterranean.
By the use of molecular markers with different evolutionary speed, namely the Internal Transcribed Spacer ITS1 and ITS2, the intervening 5.8S rDNA of the nuclear genome and the trnLUAA intron of the chloroplast DNA, our investigation aims at better elucidating interspecific phylogenetic relationships and patterns of divergence in Nonea.
At the moment, preliminary data from chloroplast DNA sequence variation seem to support the occurrence of at least two groups, one mainly of annual/biennial species and one of perennial taxa.


Polyploidy and hybridisation in the Australian Salicornioideae (Chenopodiacea)

Kelly Shepherd & Guijun Yan

School of Biology, Faculty of Natural and Agricultural Sciences, The University of Western Australia, Crawley, WA 6009, Australia

Talk — The subfamily Salicornioideae Dumort comprises the halophytic, succulent herbs and subshrubs of the Chenopodiaceae Venten. characterised by articulated leafless stems and a spike-like inflorescence. Australia has a significant proportion of the world’s diversity of the subfamily with a total of six genera; Halosarcia Wils., Pachycornia Hook.f., Sarcocornia, Sclerostegia Wils., Tecticornia Hook.f and Tegicornia Wils., 36 species and 13 subspecies currently recognised, the majority of which are endemic. Despite the diversity of Salicornioideae present in Australia no previous chromosome counts have been reported. This study documents new somatic chromosome counts from 27 accessions representing 21 Australian species across six genera. These data reveal that the Australian Salicornioideae have a basic chromosome number of x = 9, which is congruent with other members of the Chenopodiaceae and polyploidy is evident ranging from diploid to hexaploid (2x = 18, 27, 36 and 54).
Polyploidy is most common within the genus Halosarcia, the largest genus of the subfamily, and intraspecific variation is evident as three ploidy levels were detected in H. indica subsp. bidens sampled from separate populations and two ploidy levels were recorded in seedlings germinated from both an individual H. leptoclada and a H. pterygosperma adult. Polyploidy is a mechanism that fosters diversity and phenotypic variation, moreover, polyploids may be considered to be good ‘General Purpose Genotypes’ as they produce variable phenotypes that may tolerate a wider range of environmental conditions, thus ensuring their successful establishment. Halosarcia is one of the most salt-tolerant land plants in the world and these plants are almost ubiquitous around the extensive inland salt lake systems of Australia. Halosarcia displays considerable phenotypic plasticity in the field and intergrades are evident between regional subspecies particularly when taxa co-occur. Moreover, hybrids are felt to be a common occurrence between species, as plants of intermediate phenotype are frequently documented. In light of this, the role of polyploidy, hybridisation and possible apomixis in explaining the phenotypic diversity observed within this genus is discussed.


Cytological and morphological differentiation of Central European taxa of Festuca ser. Psammophilae M. Pawlus

Petr Smarda

Department of Botany, Faculty of science, Masaryk University, Kotlá_ská 2, CZ-611 37 Brno, Czech Republic

Poster — The primary aim of this project was a thorough karyological and morphological investigation of central European taxa of Festuca ser. Psammophilae M. Pawlus (F. pallens Host, F. psammophila (Celak.) Fritsch, F. vaginata Willd.).The study area includes Germany, the Czech and Slovak Republics, Southern Poland, Austria and Hungary.
The main emphasis was on whether or not it is possible to distinguish currently recognised taxa using available characters and which characters are most useful.
Results are based on the study of 350 cultivated plants and 150 herbarium specimens. A total of 45 characters were investigated. Chromosome number or ploidy level was determined for all cultivated plants and for 135 specimens (aceto-orcein method or flow-cytometry).
Two main ploidy levels were found in F. pallens: 2n=2x=14; 2n=4x=28+0–1B; three wild plants were triploids 2n=3x=21+0–1B. Within F. psammophila and F. vaginata only diploids were observed.
The whole set of taxa studied was divided into four morphologically and karyologically well-defined groups. The best-defined group is F. vaginata subsp. vaginata. The other group includes Festuca psammophila and F. vaginata subsp. dominii. Both taxa are morphologically very close, and there is probably no way to distinguish them with certainty.
Two other groups were distinguished within F. pallens. The first group is represented by the set of diploid populations and some triploid plants. The second one consists of tetraploid populations, which at the species level should be connected with the name F. glaucina (Stohr) Stohr.
The most useful characters for distinguishing among the above mentioned groups seem to be: maximum panicle length, maximum length of the highest culm sheath, length of the second lemma and its awn, number of ribs, number of veins, scabrousness of leaves, interruption of sclerenchyma ring and presence/absence of nodding panicle before anthesis (the last four are highly correlated with ploidy level).


Species level phylogenetics in the monocot family Costaceae: rapid radiation and floral evolution

Chelsea D. Specht1, 2 & Dennis W. Stevenson1

1New York Botanical Garden, Bronx, NY 10458, USA
2New York University, Department of Biology, New York, NY 10003, USA

Talk — A cladistic analysis of molecular and morphological data for a representative taxonomic sampling of Costaceae reveals that a revision of the taxonomy is necessary in to reflect phylogenetic relationships. In addition, characters typically used to define ‘natural groups’ within Costaceae are actually homoplasious, and their historical use to define taxonomic groups has resulted in the recognition of various polyphyletic genera and subgenera. Many of these defining characters are actually suites of characters, often associated with pollination syndromes. An analysis of character evolution has revealed that while many of these composite characters are homoplasious, the individual characters that comprise them provide morphological synapomorphies for monophyletic lineages. A major clade is recovered that is comprised of those new world species with inflorescence structures closely associated with pollination syndrome (either bird or bee-specific pollination). This clade appears to have undergone rapid radiation based on molecular data. Potential mechanisms involved in the apparent rapid speciation will be discussed.


Phylogenetics of the Aizoaceae and its correlation with life strategies and photosynthetic types

Joachim Thiede & Maik Veste

Hamburg University, Botanical Institute, Ohnhorststr. 18, D-22609 Hamburg, Germany

The results of a molecular phylogenetic study of the Aizoaceae and related families (Molluginaceae, Gisekiaceae, Phytolaccaceae, Petiveriaceae, Nyctaginaceae) based on non-coding internal transcribed spacer (ITS 1 & 2) sequence data of the nuclear ribosomal DNA are presented. The phylogenetic data data are interpreted on three levels:

1. Systematic implications:
– The family Molluginaceae is polyphyletic, since Limeum holds a position separate from the remainder of the family.
– The family Phytolaccaceae s.l. is polyphyletic and falls into at least two clades: The Phytolaccaceae s. str. and the Petiveriaceae.
– For the placement of the monogeneric family Gisekiaceae, a hypothesis different from a previously published one is presented.
– The family Aizoaceae is polyphyletic, and only four of the five subfamilies recognized by Hartmann are monophyletic. A new classification and circumscription of the family is suggested.

2. Correlation of phylogenetic patterns with life strategies
– In all major clades / subfamilies of the Aizoaceae, herbaceous annuals hold a basal position (thus representing the plesiomorphic condition), whereas woody perennials generally hold a terminal position (thus representing the apomorphic condition). This finding agrees with a general tendency towards secondary woodiness in the Caryophyllales.

3. Correlation of phylogenetic patterns with photosynthetic types
According to available data, the following patterns emerge:
– annuals or perennials with mostly thin, flat and weakly succulent leaves –> C3 mode of photosynthesis (e.g. Aizoon or Tetragonia; basal phylogenetic position, plesiomorphic),
– annuals and moderately succulent with mesomorphic leaves –> shift between C3 and CAM mode of photosynthesis (e.g. Mesembryanthemum; intermediate phylogenetic position),
– perennials with highly succulent xeromorphic leaves -> CAM (e.g. Ruschia; terminal phylogenetic position, apomorphic).

In summary, the phylogenetic data for the Aizoaceae provide evidence for strong correlations between phylogenetic position, life form and life strategy, and mode of photosynthesis.


Origins and history of polyploid species: what DNA variation can and can not tell us

P. H. van Tienderen & J.C.M. den Nijs

Experimental Plant Systematics, Institute for Biodiversity and Ecosystem Dynamics (IBED), Kruislaan 318, University of Amsterdam, 1098 SM Amsterdam

Invited talk - It is estimated that 50-70 per cent of flowering plants have polyploid ancestors. Polyploidy is also of prime importance in speciation, since new polyploids are often immediately isolated from their ancestors due to hybrid infertility. In fact, it could be argued that if the biological species concept it used, polyploidy is an example of instant sympatric speciation. The isolation of the parental lineages implies that they can undergo independent further evolution, after the initial formation of the polyploid that already may differ in morphology and ecology from its parents.
Despite the commonness of chromosome duplication the mechanisms and consequences are still poorly understood. Many questions can be asked: Do polyploid taxa have a single of multiple origins? What are the parental species? Do they originate from crosses of unreduced gametes, and does this occur in one or two steps? Or does somatic doubling of chromosomes play a role? How much chromosomal rearrangement occurs after formation and what happens with gene expression after polyploid formation? How much formation of multivalents occur initially and does it eventually lead to disomic inheritance due to diploidisation?
Despite a vast literature on polyploids, remarkably little is known as yet about the process itself.
Our current focus is to establish which question could be answered by looking at the traces of the process in the DNA of the polyploids. Different kinds of data can be used:

  1. Divergence of nuclear and cytoplasmic DNA from putative parental species or surviving relatives,
  2. Allele (sequence) divergence within and among duplicated loci,
  3. Patterns of linkage disequilibrium among loci.

We will argue that some of the above questions can indeed be studied using DNA variation, but that reticulate patterns and concerted evolution may easily blur any pattern.


The usefulness of Amplified Fragment Length Polymorphism in species delimitation: taxonomic status and populational structure of Hypochaeris salzmanniana (Asteraceae, Lactuceae) of the Iberian Peninsula

Karin Tremetsberger1, Salvador Talavera2, Tod Stuessy1, Maria Angeles Ortiz2, Hanna Weiss1 & Gertrud Kadlec1

1Department of Higher Plant Systematics and Evolution, Institute of Botany, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
2Departamento de Biología Vegetal y Ecología (Botánica), Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes, E-41080 Sevilla, Spain

Talk — Hypochaeris salzmanniana has been described by A.P. de Candolle in 1838 from material collected by Salzmann in Tánger (NW Morocco). Most authors have related H. salzmanniana to H. glabra and have included it as a variety, subspecies, or simply as a synonym of H. glabra L. On the basis of morphological and cytological characters, Talavera (1980, 1987) separated H. salzmanniana from H. glabra. The two species can be distinguished clearly by H. glabra with 4–7 mm long ligules, barely exserted from the involucre, and H. salzmanniana with 16–20 mm long ligules, conspicuously exserted from the involucre. Hypochaeris glabra chromosomally is 2n = 10 and H. salzmanniana 2n = 8 (as is also H. radicata). Hypochaeris salzmanniana is restricted to coastal dunes on both sides of the Straits of Gibraltar. The aim of our study was to provide molecular evidence for the taxonomic status of H. salzmanniana and its relationship to H. radicata, and to assess the populational structure of H. salzmanniana with correlations to biogeographic history. Material has been collected from Spain, Italy, and Tunisia and analyzed by Amplified Fragment Length Polymorphism (AFLP). Six selective primer combinations have been used to obtain bootstrap values supporting three well differentiated species (100% BS for H. glabra and H. salzmanniana and 52% BS for H. radicata). Out of 334 scored fragments, H. salzmanniana is differentiated from H. glabra by 95 and from H. radicata by 55 diagnostic fragments. A closer relationship of H. salzmanniana and H. radicata, therefore, is confirmed by AFLP data. Based on DNA sequence data (Samuel et al., in press), the age of origin of Hypochaeris section Hypochaeris has been estimated at the end of the Tertiary, with a more recent evolution of H. radicata from H. salzmanniana being hypothesized. The populational structure of H. salzmanniana reveals three geographically distinct subpopulations: those from Costa de la Luz along the Atlantic Ocean forming a panmictic subpopulation, of which one population grows on a fossil dune c. 1 km inland; a population near Tarifa c. 15 km W of the Straits of Gibraltar, also facing the Atlantic Ocean, forms a second subpopulation also on a fossil dune system; finally, populations near Gibraltar facing the Mediterranean Sea form a third subpopulation. The population from near Tarifa is particularly divergent and has low within-populational variation, supporting its presumptive relict nature.


Intraspecific diversifications in alpine plants due to the ice ages – some examples from the European Alps using AFLP-fingerprinting

Andreas Tribsch1 & Peter Schönswetter2

1Institute of Botany, Department of Systematics and Evolution, University of Vienna, Rennweg 14, A-1030 Vienna, Austria
2Institute of Botany, Department of Chorology and Vegetation Science, University of Vienna, Rennweg 14, A-1030 Vienna, Austria

Talk — Simultaneously to the worldwide cooling of the climate in the late Tertiary, the uplift of the Alps started (upper Miocene, c. 6 my BP) enhancing the evolution of taxa adapted to the newly formed alpine biome. Central Asian, Mediterranean and later on Arctic elements contributed to the formation of the rich Alpine flora present today. Approximately 2 my BP the dramatic Quaternary climatic fluctuations started and recurrent glaciations restricted the biota to ice-free and climatically favourable refugia. Until today, patterns of endemism exhibit high correlation to these formerly unglaciated or weakly glaciated areas. The isolation in refugia during cold stages as well as refugial situations during warm periods of the Quaternary were important factors in the evolution and radiation of alpine plants.
AFLP fingerprinting is a highly informative method for inferring relationships at the specific and intraspecific levels: I) In closely related groups there is a lack of informative sequence divergence, but sufficient resolution in AFLPs to infer taxonomic relationships. II) If a broad sampling from several localities and populations is provided, gene flow between evolutionary lineages is easily detected. III) Recent disjunctions following long-distance dispersal can be distinguished from old fragmentations of the distributional range. IV) AFLPs can help in detecting hybridisation and introgression as well as polyploidisation.
Here we present five examples of intraspecific patterns inferred with AFLP-fingerprinting to illustrate the consequences of the ice ages at different taxonomic and populational levels: (a) allopatric speciation in refugia, polyploidisation: Senecio incanus-group (3 species growing on silicates: S. persoonii in the Liguric Alps, S. halleri in the Penninic Alps and S. incanus with 3 subspecies); (b) allopatric or parapatric ecological speciation, present gene flow: Carex curvula (subsp. rosae on carbonates mainly in the SW and W Alps and subsp. curvula on silicates in the entire Alps with distribution gaps in the SW Alps); (c) divergent intraspecific lineages associated with disjunct Pleistocene refugia, some of which presently lack gene flow: Phyteuma globulariifolium; and (d) disjunctions of genetically divergent lineages due to vicariance: Androsace wulfeniana, (e) disjunctions of genetically similar lineages due to recent long-distance dispersals: Saponaria pumila.


The application of Bayesian techniques in biogeography

Hubert Turner

Theoretical Biology and Phylogenetics, Institute of Evolutionary and Ecological Sciences, Leiden University, PO Box 9516, 2300 RA Leiden, The Netherlands and National Herbarium Nederland, Leiden branch

Invited talk - One of the prominent differences between Bayesian Inference and ‘regular’ Maximum Likelihood analysis of phylogenetic trees, is that BI marks a domain in treespace as a 95% confidence interval containing the correct tree. Usually this set of trees is summarized as a majority-rule consensus tree. However, it is questionable whether such consensus trees are the most appropriate starting point for the reconstruction of a general area cladogram: the majority-rule topology may not be among the tree topologies in the set of original trees. In the ideal case, all clades in an analysis have reacted to the same area history, and thus, the true phylogenetic tree for each clade should be convertible to the true area cladogram. Of course, the true phylogeny is not known, but the set of trees produced by Bayesian Inference probably contains this tree. When several clades are used to reconstruct a general area cladogram, the true area cladogram should lie in the intersection of the sets of area cladograms derived from all tree topologies for each clade. The cladogram topologies giving rise to the area cladograms contained in the intersection do not necessarily contain any of the bipartitions of the majority-rule trees for their respective clades. This is a second argument why majority-rule consensus trees should not be used here. Because it is very impractical and time-consuming to construct an area cladogram for each tree topology in every clade’s set of trees, I propose an approximation here. When reconstructing a majority-rule consensus tree using PAUP*, the program can at the same time produce a list of all observed bipartitions. Each bipartition can be converted to a potential bipartition for an area cladogram, by computing the inner Boolean product of the (taxon * node) matrix of bipartitions with the (area * taxon) matrix of distributions. This results in an areas * node matrix, which can be used to reconstruct an area cladogram. Applying this procedure to a single clade will result in an areas* nodes matrix which gives the area cladogram derived from the majority-rule consensus tree, because the bipartitions of the m-r consensus reappear with the same frequency in the areas * node matrix. However, when constructing an areas * node matrix for a general area cladogram reconstruction, hypothetically the frequency of the erach bipartition of the true area cladogram is the sum of the frequencies with which it appears among the sets of trees for the separate clades. Just like in parsimony reconstructions homoplasy is random but true synapomorphies reinforce each other, in the approach described here true bipartitions are reinforced by their appearance in all sets of cladograms, while individual clade’s deviations from the ‘true’ vicariance pattern result in bipartitions that are not replicated by other clades’ sets of cladograms. As an example the reconstruction will be demonstrated of a general area cladogram for Sundaland using Bayesian Inference results for two clades, Coelogyne (Orchidaceae), and Macaranga (Euphorbiaceae).


Phylogenetic reconstruction in the moss genus Amblystegium based on multiple sequence data and reconciled adenosine kinase gene trees

Alain Vanderpoorten*, A. Jonathan Shaw & Cymon J. Cox

Department of Biology, Duke University, Durham, USA

* current address: Unité d'Ecologie & Biogéographie, Université Catholique de Louvain, Belgium

Talk — Maximum likelihood analyses of DNA sequences from two chloroplast regions, trnL-trnF and atpB-rbcL, and the internal transcribed spacers of 18S-5.8S-26S rRNA gene array, were performed to resolve species relationships within the moss genus Amblystegium. Although monophyly of one morphospecies could be significantly rejected, the lack of support for most clades and the partial incongruence among topologies, necessitated the use of another independent, more variable region, namely the adenosine kinase gene (adk). Sequences for adk were polymorphic but were present as multiple copies within individuals, making parology a problem for phylogenetic analyses. Multiple adk gene copies appear to have evolved in these polyploid species of Amblystegium. Adk evolution was reconstructed using a reconciled gene tree approach in which duplications and losses were minimized in the context of a species tree, assumed to be true, derived from the cpDNA and nrDNA data. Additional resolution of the species tree was then obtained by searching for reconstructions that further reduced adk duplications and losses. The final tree supported a monophyletic interpretation of A. serpens, but the other morphospecies appeared polyphyletic. Together with previous data from different molecular markers, the results support the interpretation that Amblystegium represents a recent radiation in which molecular and morphological evolution have been uncoupled.


Taraxacum sect. Erythrosperma in Western Pannonia: Are the Taraxacum Floras of W Pannonia and W Europe the same?

Radim J. Vašut1,2 & Bohumil Trávnícek1

1Department of Botany, Faculty of Science, University of Palack_, _lechtitel_ 11, CZ–78371 Olomouc, Czech Republic
2Laboratory of Genetics, Wageningen University, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands

Poster — Microspecies delimitation within Taraxacum sect. Erythrosperma (H. Lindb.) Dahlst. was studied to investigate the distribution of sexual diploids (2n=16, T. erythrospermum) and apomictic polyploids (mostly triploids) at the western margin of the Pannonian Basin (SE Czech Republic, NE Austria, W Slovakia). For this area, several species have repeatedly been cited in the literature that were known from N and NW Europe (e. g. T. proximum, T. disseminatum, T. isophyllum), but critical studies were lacking. We studied morphological variation, ecological behaviour and plasticity of plants in about 250 natural populations. Flow-cytometric analyses for discriminating the sexual diploids and apomict polyploids revealed a total of 21 different apomictic clones. Most of the species known from the literature appeared to be rare or (almost) absent. It seems that newly distinguished microspecies represent similar but different clones to western European ones. In a mixed dandelion populations of T. sect. Ruderalia and T. sect. Erythrosperma putative interspecific hybrids were found, but further investigation is required.
The study showed remarkable differences in species pattern of Taraxacum microspecies between NW Europe and W Pannonia. The distribution areas of apomictic clones within T. sect. Erythrosperma is smaller then mentioned in the literature. Only few microspecies have paneuropean distribution, whereas most of them are confined to smaller areas only.


Genetic fine-maping of apomixis elements in Taraxacum officinale auct.

Radim J. Vašut1, Marcel van Culemborg2, Erik Wijnker1, Peter J. van Dijk2 & J. Hans de Jong1

1Laboratory of Genetics, Wageningen University, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands
2Netherlands Institute of Ecology, Centre for Terrestrial Ecology, Boterhoeksestraat 22, P.O. Box 40, 6666 ZG Heteren, The Netherlands

Poster — In order to better understand the biology of apomixis in natural Taraxacum populations we started a long term project on its genetic control. Genetic analyses of crosses between diploid sexual and triploid apomicts demonstrated that apomixis in Taraxacum is genetically controlled by at least three (elements), i.e., diplospory, parthenogenesis and autonomous endosperm development. Phenotyping of the different recombinants was carried out with Nomarski microscopy of cleared whole mount female organs. The present study aims at seeking for molecular markers linked to diplospory in a population of 193 offspring individuals. Here we present a construction of linkage groups with 10 microsatellites (SSRs) using the software package JoinMap®. Two markers were found to be linked to diplospory and a third one was found to be linked to parthenogenesis. Additional mapping of at least 16 more microsatellite and numerous AFLP markers for fine mapping of the parthenogenesis gene are in progress.


Molecular markers reveal cryptic species and reproductive isolation within Polytrichum commune s.l.

Marco van der Velde, Anneke C. Boerema, Louis van de Zande, Ben O. van Zanten & R. Bijlsma

Department of Genetics, University of Groningen, Kerklaan 30, 9751 NN Haren, The Netherlands

Talk — Based on morphological characters only, the taxonomy of the bryophyte genus Polytrichum has still not been fully resolved. Nowadays, molecular genetic methodologies are available that can help to clarify some of these problems. Within P. commune s.l., the taxonomic status of several varieties, e.g. P. commune var. commune and P. commune var. uliginosum, is still debated. Allozyme electrophoresis revealed that there are two distinct multi-locus genotypes within our European P. commune samples, which coincide with differences in both morphology and habitat association. In addition, these allozyme data showed that the level of genetic differentiation between P. commune var. commune and P. commune var. uliginosum is of the same order of magnitude as generally is observed among congeneric moss species. Based on these results, we argue that these two infraspecific taxa of P. commune s.l. should be regarded as distinct species: P. commune and P. uliginosum.
The finding that within a sympatric population no gametophytes with recombinant (P. commune x P. uliginosum) allozyme multi-locus genotypes were ever observed, indicates that P. commune and P. uliginosum are reproductively isolated. By means of a paternity analysis, the mechanism of reproductive isolation between these two species was investigated using diagnostic microsatellite markers. Analysis of both P. commune and P. uliginosum sporophytes at different stages of development revealed that reproductive isolation is highly asymmetrical and (at least partly) post-zygotic.


The ephemeral nature of polyploidy: Patterns and processes of evolution in European Asplenium

Johannes Vogel1, Stephen Russell1, Michael Grundmann1, Fred Rumsey1, Harald Schneider2, 3, Mary Gibby4 & John Barrett5

1Department of Botany, Natural History Museum, SW7 5BD London, UK
2Albrecht-von-Haller Institute of Plant Sciences, University of Göttingen, 37073 Göttingen, Germany
3Department of Biology, Duke University, NC 27708, USA
4Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh EH3 5LR, Scotland
5Department of Genetics, University of Cambridge, UK

Invited talk - The "success" of polyploid plants in relation to their diploid progenitors is attributed to their ability to maintain higher levels of heterozygosity, in expressing less inbreeding depression and their often polyphyletic origins. This mode of formation incorporates genetic diversity from multiple progenitor populations into the polyploid "species", thus leading to a broad sampling of ancestral diversity into the polyploid gene pool.
With more than 50 taxa Asplenium is the most species rich fern genus in Europe. Half of these rock ferns are diploid and they are ancestral to all European polyploids. Of these 50% are auto- or segmental allopolyploids and 50% are allotetraploids. A prominent example for a European allotetraploid is Asplenium adulterinum, a taxon with a widespread but scattered distribution, mostly confined to serpentine outcrops and endemic to Europe and British Columbia/Canada. In contrast, the ancestral diploids, A. viride and A. trichomanes, are widespread and abundant in the Northern Hemisphere. We have sampled more than 10,000 plants, from hundreds of populations, for allozyme variation (21 loci), and a subset for cpDNA variation, to access the levels of diversity and prevailing breeding systems in both, the ancestral diploids and derived polyploids. Despite our findings that demonstrate that Asplenium adulterinum, and other European allopolyploid taxa, adhere to all of the attributes that are associated with polyploidy as a success story, they are not as widespread or abundant as their ancestral diploids. On the bases of our findings we argue that, in Europe, diploid taxa are the success story, they are widespread, support most of the genetic variation and evolutionary potential, and have often occupied niches in putative long-term glacial refugia. Climate fluctuation and habitat disturbance during Pleistocene glaciation cycles have led to contact and hybrid zones between distinct diploid taxa, resulting in repeated polyploid formation. However, during the, in evolutionary time scales, relatively short interglacials such allopolyploids are often not able to free themselves ecologically and genetically from their diploid ancestors. Thus, they are confined to narrow ecological niches, have fragmented populations, are prone to genetic drift and/or habitat destruction and thus are ephemeral.


Polymorphic chloroplast microsatellites in Macaranga (Euphorbiaceae): Tools to analyze the phylogeography of an ant plant

Miriam Vogel, Gudrun Bänfer & Kurt Weising

Plant Molecular Systematics, FB19 Biologie/Chemie, Universität Kassel, D-34109 Kassel, Germany

Talk — As part of our ongoing study on speciation processes in the paleotropic ant-plant genus Macaranga, we have initiated a phylogeographic analysis based on chloroplast haplotypes. To screen for size-variable DNA regions in the Macaranga chloroplast genome, we initially applied ten universal PCR primer pairs described by Weising and Gardner (Genome 42: 9–19, 1999) to a small set of specimens, covering various taxonomic levels from intrafamilial (several genera of Euphorbiaceae) to intraspecific (several specimens of various Macaranga species). Eight primer pairs produced PCR fragments that behaved as single, discrete, and size-variable bands after separation on agarose gels. The 5 most promising candidate pairs were further analysed with an extended set of DNA templates, and PCR products were separated on a LICOR fluorescence sequencer, allowing single-base resolution. Variation was detected within several Macaranga species, with up to 4 different haplotypes among 6 conspecific specimens. Comparative sequence analysis of the PCR products showed that microsatellites were responsible for the observed size variation at three of the five loci sequenced. In addition to (A)n/(T)n repeats which are typically found in chloroplast DNA, we also identified a variable (CT)n-repeat., with n=4 to n=8. These polymorphic cpDNA markers will now be applied to analyze the geographic distribution of haplotypes in two myrmecophytic Macaranga species, i.e. M. indistincta and M. pearsonii.


Domain directed profiling; a glance at molecular evolution

Ben Vosman, Gerard van der Linden & René Smulders

Plant Research International, PO Box 16, 6700 AA Wageningen, The Netherlands

Invited talk — Genetic diversity at or below the species level use is mostly characterized with supposedly neutral markers. This type of marker is very effective for a wide range of applications including the establishment of the breeding system, the study of gene flow, and the reconstruction of phylogenies. However, ‘users’ of biodiversity are not interested in neutral variation but rather in variation that might affect the evolutionary potential of a species or the performance of an individual variety. Therefore several routes are exploited to characterize species for ‘functional’ variation. Phenotypic variation is tagged with molecular markers using QTL and LD-mapping approaches, as well as domain directed DNA-profiling techniques.
A significant number of genes is not present in the genome as single copy gene but as a member of a gene family. These gene families are characterized by conserved domains, i.e. regions which are highly similar between individual members of the family. Individual members of gene families have slightly different sequences resulting in different functions. Examples of such families are MADS box genes, which are involved in developmental processes, and protein kinases, which are involved in signal transduction.
Another example is the family of genes governing the first step in the disease resistance pathway. Most resistance genes characterized to date are of the NBS-LRR type. The NBS domain contains highly conserved motifs that can serve as targets for a specific type of domain directed profiling, which we call NBS profiling.
In NBS profiling, the conserved motifs within the NBS are used to design primers that direct a PCR reaction towards these genes. It results in DNA profiles that are highly enriched for bands derived from resistance genes. Depending on the primers used, more than 90% of the bands is of the desired gene family.
A number of applications of domain directed profiling will be presented and some consequences discussed.


Palaeogeographic affinity of the Permian Jambi flora from Sumatra

I.M. van Waveren, J.H.A. van Konijnenburg-van Cittert & R.H. Wagner

National Museum of Natural History, Naturalis, Leiden, The Netherlands

Poster — At Naturalis we are revising the main genera from the Jambi flora (Jongmans & Gothan, 1936) from the Lower Permian of Sumatra (Indonesia). This revision will enable us to compare the Jambi flora with more recent work on Permian South East Asian floras from Shansi (China), Thailand, Malaysia and from Australia.
This comparison will give an indication on the palaeogeographic affinity of the region of Sumatra on which the Jambi flora is located.
Sumatra is composed of two micro-continents (the Sibumasu Terrane and the Indochina Terrane) and the boundary between both terranes runs more or less through the region where the Jambi flora was collected. The Sibumasu Terrane was separated from Gondwana during the Permian. This implies that if the Jambi flora is located on this terrane, it will resemble other Gondwana floras from the same age (e.g. in Australia). On the other hand, if the Jambi flora is located on the Indochina Terrane, which was already separated from Gondwana in the Devonian and joined Cathaysia (including parts of e.g.China and Thailand), then the flora should contain Cathaysian elements.
Comparison of the different palaeoflora's in the different regions will be achieved through clustering of the plants according to morphological features. Localities will be clustered according to their plant clusters proportions.


The relationships of Sauropus (Euphorbiaceae), a call for a molecular phylogenetic analysis

Peter C. van Welzen

Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands

Poster — Sauropus is a relatively large genus of c. 60 species. Its distribution ranges from India throughout SE Asia and the Malay Archipelago to Australia. There are two centres of diversification, one in Thailand and Indochina, the other in Australia. The representatives of Sauropus in Australia were formerly classified in a separate genus, Synostemon. Former Synostemon has one wide-spread representative in SE Asia: S. bacciformis.
Most species in Sauropus (incl. Synostemon) are small shrubs with small leaves and axillary flowers (fascicles). In this respect they look very much alike genera like Phyllanthus, Glochidion, and Breynia; genera with which they are often confused and to which they are probably closely related. Sauropus, Breynia, and part of Phyllanthus have pollen with diploporate colpi; the larger part of Phyllanthus, Glochidion and the other genera in the same subtribe and surrounding subtribes have monoporate colpi (Vernie Sagun). The androecium of Sauropus s.s. and S. bacciformis is very typical, a slender androphore which apically splits into three horizontal branches under which the anthers hang. The androecium (and gynoecium) of Synostemon (excl. S. bacciformis) is like that of Breynia (and Glochidion), a thick androphore with the anthers apically along it.
A morphology-based phylogenetic analysis of Sauropus s.l. and representatives of the other three genera resulted in thousands of most parsimonious cladograms. A result of the presence of mainly autapomorphies and parallel developments (e.g., indumentum, inflorescences). The strict consensus cladogram showed, besides many large polytomies, that Sauropus (excl. Synostemon) together with S. bacciformis form a monophyletic group, basal to the Sauropus clade are the clades for Breynia, part of Phyllanthus, and the remainder of Synostemon. Basal to these diploporate taxa is Glochidion and below that the remainder of Phyllanthus.
However, the cladistic results are very poor and certainly not statistically significant (bootstrap, decay indices) and no new taxonomic decisions can be based on it (e.g., reinstating Synostemon). Therefore, a call is made to help with a molecular phylogenetic analysis of the notorious subtribe Flueggeinae (to which above mentioned genera belong).


Evolution of the ginseng genus: geographic disjunctions, rapid radiations, and polyploidy

Jun Wen & Chunghee Lee

Department of Botany, Field Museum of Natural History, 1400 S. Lake Shore Dr., Chicago, IL 60605, USA

Talk — Panax L. (the ginseng genus, Araliaceae) is medicinally important in Asia. Various molecular markers have been employed to help delimit taxa, elucidate the evolutionary relationships, detect evolutionary patterns, and contruct the biogeographic history for the genus. The taxonomy of Panax has been highly controversial. Biogeographically Panax shows a classical disjunct distribution between eastern Asia and eastern North America. In this study, we have used sequences of the internal transcribed spacer (ITS) regions of nuclear ribosomal DNA, and the chloroplast ndhF gene and the trnC – trnD intergenic spacer, and chloroplast DNA restriction site variation. Our analyses indicate two independent intercontinental disjunctions between Asia and North America in the ginseng genus. The first is ancient, involving the eastern North American P. trifolius, and the Sino-Himalayan P. pseudoginsengP. stipuleanatus. The second disjunction is suggested to have occurred in the late Tertiary, involving the eastern North American P. quinquefolius and the eastern Asian P. ginsengP. japonicus. Comparisons of the nuclear and chloroplast DNA data suggest that Panax bipinnatifidus and P. major are autotetraploids, each taxon has arisen independently multiple times. Our data suggest that the Asian species of Panax have experienced a rapid radiation in the Sino-Himalayan region. Fourteen species are currently recognized within Panax based on the morphological and phylogenetic evidence.


Genes, jeans and genomes: insights from the cotton genus

Jonathan Wendel

Department of Botany, Iowa State University, Ames, IA 50011, USA

Invited talk — The cotton genus (Gossypium) includes approximately 50 species with a global distribution in arid to semi-arid regions of the tropic and subtropics. Gossypium species exhibit extraordinary morphological diversity, ranging from herbaceous perennials to small trees and having a great variety of floral and vegetative features. A parallel level of cytogenetic and genomic diversity has evolved during the global radiation of the genus, and DNA content varies over three-fold among the diploid species. Four species have independently been domesticated for their fiber, two each in the Old and New World. Molecular phylogenetic studies have clarified the evolutionary history of Gossypium, including its origin 5–15 million years ago. Speciation in the genus has been facilitated by multiple episodes of trans-oceanic dispersal, invasion of new ecological niches, acquisition of specialized reproductive syndromes, and a surprisingly high frequency of natural interspecific hybridization among lineages that presently are inter-sterile. Allopolyploid Gossypium emerged from a chance merger of two genomes that vary two-fold in size and evolved in isolation for millions of years. This remarkable biological reunion has led to novel genomic interactions, a high frequency of gene silencing, and possible functional differentiation among homoeologues. Polyploidy also is suggested to have opened up new avenues for agronomic improvement.


Bikinia and Tetraberlinia (Fabaceae): old sisters or recent Siamese twins?

Jan J. Wieringa

Nationaal Herbarium Nederland, Wageningen University branch, Generaal Foulkesweg 37, 6703 BL Wageningen, The Netherlands

Talk — Recent morphological and molecular studies on Bikinia and Tetraberlinia (Detarieae s.l., Macrolobieae-clade) show that these two genera constitute a single clade. However, whether both genera are monophyletic remains to be seen. Bikinia species share a fair amount of synapomorphologies, both in morphological and molecular datasets, and form without to much doubt a monophyletic group. The only doubt so far on the monophyly of Bikinia originates from the existence of the monotypic genus Icuria from Mozambique. Some morphological evidence and ITS sequences put this genus inside the Bikinia clade, while other sequences suggest it is more closely related to some other genera of the Macrolobieae clade, especially Aphanocalyx. Tetraberlinia on the other hand lacks strong evidence for its monophyly, phylogenetic studies place it either as sister to Bikinia or show Bikinia as derived from within it.
Most species of Tetraberlinia are quite different in their leaf and floral morphology, while Bikinia species have very similar flowers and are usually hard to tell apart. This phenomena is not only present in the morphological characters, also molecular branch lengths are very short within this clade. These short branches so far made it hard to reconstruct the internal topology of this genus. They also suggest that Bikinia evolved fairly recent, possibly as a result of the many glacial rain forest refuges present in western central Africa. On the other hand also hybridisation may have played a role in the origin of some of the species.
To test the position of Tetraberlinia and clarify the topology within both genera, additional samples of both Tetraberlinia and Bikinia, among which a recently discovered species with some intermediary morphological characters between the two genera, are added to the existing ITS sequences. This new phylogeny will be compared to an AFLP phylogeny of both genera, which may point to some possible hybridisation. Whether Bikinia and possibly some groups within Tetraberlinia show recent speciation and/or radiation will be investigated using molecular clock estimates and by searching for vicariants in adjacent postulated refuges. The position of Icuria will be tested as well using AFLPs.


Angiosperm divergence times: congruence and incongruence between fossils and sequence divergence estimates

Niklas Wikström

Department of Botany, The Natural History Museum, London SW7 5BD, UK

Invited talk — The documentation of derived angiosperm lineages from increasingly older geological deposits, and growing evidence of considerable diversity in flower, seed, and pollen morphology in the mid Cretaceous both imply that the timing of early angiosperm cladogenesis may be older then our current fossil-based estimates indicate. An alternative to fossils for calibrating the phylogenetic tree comes from divergence in DNA sequence data. Here, we report on an analysis using non-parametric rate smoothing and a three-gene data set covering c. 75% of all angiosperm families recognized in recent classifications. The results provide an initial hypothesis of angiosperm diversification times and by using an internal calibration point, an independent evaluation of angiosperm and eudicot origins is accomplished. Results are compared to fossil-based estimates of both magnolids and eudicot divergence times, and possible directions of future analyses are discussed.


Hybridisation acts as unique patterns of plant evolution – a multilevel approach to hybridisation analysis

Volker Wissemann

Friedrich-Schiller-Universität Jena, Institut für Spezielle Botanik, Philosophenweg 16, D-07743 Jena, Germany

Talk — Hybridisation in plants is – in general – regarded as a relatively frequent and spanning factor of plant evolution. This frequency inveigles towards a comprehensive view of hybridisation but points out to be misleading by going into detailed hybrid analysis. If just looking at numbers, more or less 50% of all higher plants are assumed to be of hybrid origin, but hybridisation is not evenly distributed among plants. Certain families like Rosaceae, Asteraceae, Poaceae or Orchidaceae form the core groups of hybridisation processes, whereas other groups seem to be not ‘susceptible’ for hybridisation, or have not been studied thoroughly.
A focussed view on factors affecting hybridisation clearly indicates hybridisation acts as single fortuitous events rather than a mechanism following generalisable rules. Furthermore, compared to other factors of evolution such as mutation or isolation, hybridisation seems to be much more diffuse by acting on multiple levels within the plant.
For each single hybrid analysis two major topics have to be studied in detail. First, factors leading to hybridisation acts. Second, effects of successful hybridisation.
A number of factors such as breeding systems (sexual versus asexual and gradients), life span (annual versus perennial), area (disjunct, closed), location within the area, spread of pollen and diaspores, radiation, dynamics and abundance in historical times, habitat structure, incompatibility mechanisms etc. influence the rate and success of reticulation.
The effect of hybridisation has to be regarded on different levels like gene evolution, formation of characters (morphological, anatomical, chemical, genetic) ranging from parental patterns to intermediate or novel characters as well as the change of Eigenzeiten to tachytelic or bradytelic evolution again on multiple levels. Furthermore posthybridogenic effects such as hybrid fitness, stabilisation and radiation processes have to be taken into account. Looking at hybrids as holistic systems different effects of hybridisation on plant-organismic interactions can be seen, ranging from antagonistic reactions to coevolutionary, mutualistic processes. Additionally differential interactions between hybrids and non-organismic parameters are obvious e.g. colonisation of new habitats by development of novel characters such as physiological tolerance against specific soil parameters.
By analysis of both, factors and effects it becomes evident, that in the same family or even the same genus it is not possible to predict rate and success of hybridisation patterns.
As a consequence, hybridisation has to be seen as a common evolutionary factor in the plant kingdom, but in both, mode of establishment and success for the origin of unique life histories the analysis has to repeated for each singular case studie and can not be generalised a priori.


Posthybridogenic evolution of nuclear ribosomal ITS-sequences

Volker Wissemann

Friedrich-Schiller-Universität Jena, Institut für Spezielle Botanik, Philosophenweg 16, D-07743 Jena, Germany

Poster — Hybridisation plays a significant role for the evolution and speciation of plants. Nevertheless the knowledge about frequency and importance of reticulate evolution in plants in an overall view is limited for a variety of reasons ranging from theoretical biases to practical-technical problems of experimental hybrid detection. This presentation focusses on the evolution of the nuclear ribosomal Internal Transcribed Spacer (nrITS) region following hybridisation and the potential use for detection and analysis of hybridisation patterns in plant evolution.
The ITS-regions are one of the most important molecular marker systems in use for phylogenetic reconstruction. In general we can assume three closely linked ways of evolution within the nrITS-region:
1) Concerted evolution: multigene family nucleotide sequences evolve in concert among loci within a species and thereby remain homogenous. This is a general assumption and concept, however, several problems arise connected to the standard laboratory practice. Very few studies exist, which focus explicetely on intraspecific or even intrapopulational variation of ribosomal DNA, most studies are undertaken on individual specimen. So it might be difficult if not impossible to make a decision between concerted evolution and non-concerted evolution s.lat.
2) Non-concerted evolution s.lat.: Def.: Nucleotide sequences among loci belonging to a multigene family do not or partially evolve in concert within a species, and thereby remain heterogenous. No intraindividual polymorphism, but intrapopulational polymorphism. This was shown on clonal variation following hybridisation in Winteraceae.
3) Non-concerted evolution s.str.: intraindividual polymorphisms exist but can again be divided into two subheadings:
3a) Intragenomic polymorphism: Intrachromosomal concerted evolution, but no interchromosomal interaction. This was enlightend by studies in the genus Rosa (Rosaceae) and Hordeum (Poaceae), two plant groups containing only one NOR per haploid chromosome set. For a correct application of these studies it is of absolut importance to know the number of NOR´s per genome to compare homologues ITS-sequences of orthologues origin.
3b) Intrachromosomal polymorphism: Non-concerted evolution within a single NOR exemplified by studies in Zea and the analysis of clonal variation of the A and C-ITS-type in Rosa.
The role of non-concerted spacer evolution is highlightened against the traditional assumption of concerted evolution of multicopy sequence units and the implication for phylogenetic reconstruction is briefly discussed. It is shown, that detection and use of non-concerted sequence evolution extends rather than restricts the application of molecular markers in the analysis of plant diversity and that ITS evolution represents a multifaceted picture of genetic evolution.


Recognition of cryptic species in Asplenium nidus complex (Aspleniaceae) by analyses of molecular data, ecological comparison and crossing experiments

Yoko Yatabe & Noriaki Murakami

Department of Botany, Faculty of Science, Kyoto University, 606-8502, Sakyou, Kyoto, Japan

Talk — Cytotaxonomical and enzyme electrophoretic data have discovered several cryptic species in various lineages of homosporous ferns (Paris et al., 1989). Chloroplast DNA sequences may provide us with favourable information because of its advantageous feature as a molecular marker. We examined rbcL sequences in various fern species and found a large amount of variations among conspecific materials. Considering the slow evolutionary rate of rbcL, the large amount of rbcL sequence variation within a single morphological species may suggest that it contain several cryptic species. Especially, in bird-nest fern, Asplenium nidus sensu Holttum (1974), the difference of rbcL sequences between most distantly related individuals reached 4-5%. In the sympatric populations of A. nidus of Mt. Halimun National Park, West Java, Indonesia, we found five rbcL sequence types. Based on the molecular phylogenetic analysis with plants from other localities, the five rbcL types from West Java were not closely related to each other. In order to test the hypothesis that the assemblages of A. nidus delimited based on the rbcL sequences are separate Mendelian populations and gene flow is disrupted by reproductive isolation one another, we examined allozyme polymorphism of the populations in West Java. As the result, these rbcL types were genetically differentiated also in their nuclear genomes, and our hypothesis was supported. From our ecological observation, it is also suggested that these five rbcL types are differentiated in their habitat preference. Habitats differ among rbcL types with respect to altitude or the position where the plants grow on the tree trunks. Moreover, crossing experiments were performed among various pairs of rbcL types, using the plant materials collected from West Malesiana region, including West Java, and it was revealed that hybrids failed to form between many pairs of the rbcL types. It is suggested that there may exist a lot of cryptic species in Asplenium nidus complex and that rbcL is an efficient first key to find cryptic species.


Morphological stasis, reproductive isolation and phylogeography in the red algal species complex Bostrychia radicans/B. moritziana.

Giuseppe C. Zuccarello1 & John A. West2

1Nationaal Herbarium Nederland, Universiteit Leiden branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands
2School of Botany, University of Melbourne, 3010 VIC, Australia

Talk — The cosmopolitan species group consisting of Bostrychia radicans and Bostrychia moritziana (Ceramiales, Rhodomelaceae), which differ in a single morphological character, shows high levels of inter- and intraspecific genetic variation (up to 10% using plastid-encoded rbcL DNA sequence data). Phylogenetic reconstruction shows seven well-supported and mostly wide-spread lineages. The lineages are reproductively isolated from each other (not zygotes formed) and can be considered as cryptic species. Samples that are evolutionarily divergent, but morphologically identical, can be found in the same locality. Within each of these seven lineages there is also a high level of genetic variation. Calibration of a molecular clock of samples within the most common North American lineage reveals that samples share a recent common ancestor over 12 million years ago. Samples from Pacific Mexico share a closer common ancestor (< 3 million years) to some samples from Atlantic USA then sympatric samples in the Atlantic USA do to each other. Phylogenetic relationships suggest that the distribution of these algae is influenced by recent climatic condition and by range expansion possibly following the last glacial maximum. Hybridization experiments reveal that individuals that differ by as little as 3 base pairs in the plastid encoded RuBisCo spacer are reproductively isolated. Samples from either side of the Americas, are partially compatible, as they produce zygotes forming (carposporophytes) but no meiotic products (tetraspores) are formed. It appears that reproductive isolation forms quickly in these organisms (at least as quickly as our presently most variable molecular marker). This leads to a wide array of reproductively isolated lineages which can ultimately lead to morphological differentiation (morphospecies) and may partially explaining the reason for the species richness of this marine algal division.


 


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Last update on Friday November 08, 2002 by P.B. Pelser